1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agtttctcatatattgtattattctatcctttttttttgaaacgatgtattactctatccttaacatctaaaaactatcatgttcttgcaatctctacagATTAAAGGAACAGTGTTCATGACCACTTCAAATGGTGCATATGTTGATATCCAATCGAAGTCTACTGCTTTCTTGCCTTTGGATGAGGCATGCCTTCTCG
species | Oryza sativa |
transcript | LOC_Os03g20100.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGACTCCGCCGTCGAGTCCACCGACATCGACACCGATATCGGCTCACTC ATTAAAGGAACAGTGTTCATGACCACTTCAAATGGTGCATATGTTGATATCEST: gi|13165465|gb|AU174262.1|AU174262
genomic: TCGACTCCGCCGTCGAGTCCACCGACATCGACACCGATATCGGCTCACTCgtaatccacc ... atctctacagATTAAAGGAACAGTGTTCATGACCACTTCAAATGGTGCATATGTTGATATC
EST: TCGACTCCGCCGTCGAGTCCACCGACATCGACACCGATATCGGCTCACTC ATTAAAGGAACAGTGTTCATGACCACTTCAAATGGTGCATATGTTGATATC
genomic: TCGACTCCGCCGTCGAGTCCACCGACATCGACACCGATATCGGCTCACTCgtaatccacc ... atctctacagATTAAAGGAACAGTGTTCATGACCACTTCAAATGGTGCATATGTTGATATC
tgtattactctatccttaacatctaaaaactatcatgttcttgcaatctctacagATTAAAGGAACAGTGTTCATGACCACTTCAAATGGTGCATATGTTGATATCCAATCGAAGTCTACTGCTTTCTTGCCTTTGGATGAGGCATGCCTTCTCG
atctaaa putative branch site (score: 82)
tctctac putative PPT
ttaacatctaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtttctcatatattgtattattctatcctttttttttgaaacgatgtattactctatccttaacatctaaaaactatcatgttcttgcaatctctacagATTAAAGGAACAGTGTTCATGACCACTTCAAATGGTGCATATGTTGATATCCAATCGAAGTCTACTGCTTTCTTGCCTTTGGATGAGGCATGCCTTCTCG
- - - - - - - - - - - - - - - - - - - gaaacga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttgca