Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88422198|gb|CI689000.1|CI689000EST: GGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCTTCCTCTCCGCTCCGCAG GTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGA
genomic: GGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCTTCCTCTCCGCTCCGCAGgtaaacacca ... tgtgtaccagGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGA
EST:
gi|163927963|gb|EG714271.1|EG714271EST: GGCTAGCAGGCGGCGGCGGCGGAGCTCAAGGCTTCCTCTCCGCTCCGCAG GTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGA
genomic: GGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCTTCCTCTCCGCTCCGCAGgtaaacacca ... tgtgtaccagGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGA
EST:
gi|88664698|gb|CI701615.1|CI701615EST: GGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCTTCCTCTCCGCTCCGCAG GTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGA
genomic: GGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCTTCCTCTCCGCTCCGCAGgtaaacacca ... tgtgtaccagGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGA
EST:
gi|163919834|gb|EG714896.1|EG714896EST: CTCAAGGCTTCCTCTCCGCTCCGCAG GTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGA
genomic: CTCAAGGCTTCCTCTCCGCTCCGCAGgtaaacacca ... tgtgtaccagGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGA
EST:
gi|86906057|gb|CI292588.1|CI292588EST: GGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCTTCCTCTCCGCTCCGCAG GTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGA
genomic: GGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCTTCCTCTCCGCTCCGCAGgtaaacacca ... tgtgtaccagGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGA
EST:
gi|88347904|gb|CI635997.1|CI635997EST: GGCGAGCAGGCGGCGGCGGGGGAGCTCAAGGCTTCCTCTCCGCTCCGCAG GTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGA
genomic: GGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCTTCCTCTCCGCTCCGCAGgtaaacacca ... tgtgtaccagGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGA
EST:
gi|163927954|gb|EG714262.1|EG714262EST: GGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCTTCCTCTCCGCTCCGCAG GTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGA
genomic: GGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCTTCCTCTCCGCTCCGCAGgtaaacacca ... tgtgtaccagGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGA
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
26 (upstream exon),
62 (downstream exon)
Score:
6CAGGATCCACCACTGCTCCAGCTCTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCTTCCTCTCCGCTCCGCAGgtaaacacca ... tgtgtaccagGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGACATGGGACGCCCAGGATGAAACCTGTGGTATATGCAGGATGGCATTCGA
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atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgcgcctgatatctaaatagctgctcacgaatccacctcccttattgtgtaccagGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGACATGGGACGCCCAGGATGAAACCTGTGGTATATGCAGGATGGCATTCGA
tgctcac putative branch site (score: 6)
tccacctcccttatt putative PPT
atatctaaata TA-rich tract