1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacgtgccctccccccgtgtcgcgtttctggtctcgtctcgggattccgtgatgctgatggcgtgtcgggttttgttcttgttcttggatctgcggtttggcagGTGTTCGACGGACACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGCACCTGCTGGAGCACGTGATGAGCGCCGTGCCGCAGGGCATCGGCCGCGACG
species | Oryza sativa |
transcript | LOC_Os03g18970.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACTGCCTCCGCGTCCCGGGCGACCCTTCCTCCGCCTTCTCCGTCTTCGCC GTGTTCGACGGACACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGCACEST: gi|86883942|gb|CI309912.1|CI309912
genomic: ACTGCCTCCGCGTCCCGGGCGACCCTTCCTCCGCCTTCTCCGTCTTCGCCgtacgtgccc ... ggtttggcagGTGTTCGACGGACACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGCAC
EST: ACTGCCTCCGCGTCCCGGGCGACCCTTCCTCCGCCTTCTCCGTCTTCGCC GTGTTCGACGGACACAATGGCGTGTCGGCGGCGGEST: gi|117230563|gb|CT842171.1|CT842171
genomic: ACTGCCTCCGCGTCCCGGGCGACCCTTCCTCCGCCTTCTCCGTCTTCGCCgtacgtgccc ... ggtttggcagGTGTTCGACGGACACAATGGCGTGTCGGCGGCGG
EST: ACTGCCTCCGCGTCCCGGGCGACCCTTCCTCCGCCTTCTCCGTCTTCGCC GTGTTCGACGGACACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGCACEST: gi|88420974|gb|CI620292.1|CI620292
genomic: ACTGCCTCCGCGTCCCGGGCGACCCTTCCTCCGCCTTCTCCGTCTTCGCCgtacgtgccc ... ggtttggcagGTGTTCGACGGACACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGCAC
EST: ACTGCCTCCGCGTCCCGGGCGACCCTTCCTCCGCCTTCTCCGTCTTCGCC GTGTTCGACGGACACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGCAC
genomic: ACTGCCTCCGCGTCCCGGGCGACCCTTCCTCCGCCTTCTCCGTCTTCGCCgtacgtgccc ... ggtttggcagGTGTTCGACGGACACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGCAC
tgatgctgatggcgtgtcgggttttgttcttgttcttggatctgcggtttggcagGTGTTCGACGGACACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGCACCTGCTGGAGCACGTGATGAGCGCCGTGCCGCAGGGCATCGGCCGCGACG
tgctgat putative branch site (score: 15)
ttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgccctccccccgtgtcgcgtttctggtctcgtctcgggattccgtgatgctgatggcgtgtcgggttttgttcttgttcttggatctgcggtttggcagGTGTTCGACGGACACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGCACCTGCTGGAGCACGTGATGAGCGCCGTGCCGCAGGGCATCGGCCGCGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA