1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gttaccacttactactcctcccctcaccgtgaagcgcgccgccgccggaatcgttccgtgcaaagcaaaggggaaaacaaatcgcggctatgttccggttttgttggttggtttgagtgctgggctcgtgaaccgatggtggttttactaacctgtgcatttgttcgcgtgcagAGGAAGCGGCTGCGGGAAGCGATTGTAGGGTGTCGAAGATTTACGGAGTGGCTGGCGTGATCAGGTTGCTCGCCG
species | Oryza sativa |
transcript | LOC_Os03g18080.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCTTCGCCGTCTCCCGCTCCAACGGCTCCCTCCGCCCCCTCTCCGCAG AGGAAGCGGCTGCGGGAAGCGATTGTAGGGTGTCGAAGATTTACGGAGTGGEST: gi|33675005|gb|CF303244.1|CF303244
genomic: CGCCTTCGCCGTCTCCCGCTCCAACGGCTCCCTCCGCCCCCTCTCCGCAGgttaccactt ... tcgcgtgcagAGGAAGCGGCTGCGGGAAGCGATTGTAGGGTGTCGAAGATTTACGGAGTGG
EST: CGCCTTCGCCGTCTCCCGCTCCAACGGCTCCCTCCGCCCCCTCTCCGCAG AGGAAGCGGCTGCGGGAAGCGATTGTAGGGTGTCGAAGATTTACGGAGTGGEST: gi|88412895|gb|CI576159.1|CI576159
genomic: CGCCTTCGCCGTCTCCCGCTCCAACGGCTCCCTCCGCCCCCTCTCCGCAGgttaccactt ... tcgcgtgcagAGGAAGCGGCTGCGGGAAGCGATTGTAGGGTGTCGAAGATTTACGGAGTGG
EST: CGCCTTCGCCGTCTCCCGCTCCAACGGCTCCCTCCGCCCCCTCTCCGCAG AGGAAGCGGCTGCGGGAAGCGATTGTAGGGTGTCGAAGATTTACGGAGTGGEST: gi|88298501|gb|CI563496.1|CI563496
genomic: CGCCTTCGCCGTCTCCCGCTCCAACGGCTCCCTCCGCCCCCTCTCCGCAGgttaccactt ... tcgcgtgcagAGGAAGCGGCTGCGGGAAGCGATTGTAGGGTGTCGAAGATTTACGGAGTGG
EST: CGCCTTCGCCGTCTCCCGCTCCAACGGCTCCCTCCGCCCCCTCTCCGCAG AGGAAGCGGCTGCGGGAAGCGATTGTAGGGTGTCGAAGATTTACGGAGTGGEST: gi|86888398|gb|CI303680.1|CI303680
genomic: CGCCTTCGCCGTCTCCCGCTCCAACGGCTCCCTCCGCCCCCTCTCCGCAGgttaccactt ... tcgcgtgcagAGGAAGCGGCTGCGGGAAGCGATTGTAGGGTGTCGAAGATTTACGGAGTGG
EST: CGCCTTCGCCGTCTCCCGCTCCAACGGCTCCCTCCGCCCCCTCTCCGCAG AGGAAGCGGCTGCGGGAAGCGATTGTAGGGTGTCGAAGATTTACGGAGTGGEST: gi|117222519|gb|CT845898.1|CT845898
genomic: CGCCTTCGCCGTCTCCCGCTCCAACGGCTCCCTCCGCCCCCTCTCCGCAGgttaccactt ... tcgcgtgcagAGGAAGCGGCTGCGGGAAGCGATTGTAGGGTGTCGAAGATTTACGGAGTGG
EST: CGCCTTCGCCGTCTCCCGCTCCAACGGCTCCCTCCGCCCCCTCTCCGCAG AGGAAGCGGCTGCGGGAAGCGATTGTAGGGTGTCGAAGATTTACGGAGTGGEST: gi|29624693|gb|CB629704.1|CB629704
genomic: CGCCTTCGCCGTCTCCCGCTCCAACGGCTCCCTCCGCCCCCTCTCCGCAGgttaccactt ... tcgcgtgcagAGGAAGCGGCTGCGGGAAGCGATTGTAGGGTGTCGAAGATTTACGGAGTGG
EST: CGCCTTCGCCGTCTCCCGCTCCAACGGCTCCCTCCGCCCCCTCTCCGCAG AGGAAGCGGCTGCGGGAAGCGATTGTAGGGTGTCGAAGATTTACGGAGTGGEST: gi|88403694|gb|CI611349.1|CI611349
genomic: CGCCTTCGCCGTCTCCCGCTCCAACGGCTCCCTCCGCCCCCTCTCCGCAGgttaccactt ... tcgcgtgcagAGGAAGCGGCTGCGGGAAGCGATTGTAGGGTGTCGAAGATTTACGGAGTGG
EST: CGCCTTCGCCGTCTCCCGCTCCAACGGCTCCCTCCGCCCCCTCTCCGCAG AGGAAGCGGCTGCGGGAAGCGATTGTACGGTGTCGAAGATTTACGGAGTGGEST: gi|86883987|gb|CI309935.1|CI309935
genomic: CGCCTTCGCCGTCTCCCGCTCCAACGGCTCCCTCCGCCCCCTCTCCGCAGgttaccactt ... tcgcgtgcagAGGAAGCGGCTGCGGGAAGCGATTGTAGGGTGTCGAAGATTTACGGAGTGG
EST: CGCCTTCGCCGTCTCCCGCTCCAACGGCTCCCTCCGCCCCCTCTCCGCAG AGGAAGCGGCTGCGGGAAGCGATTGTAGGGTGTCGAAGATTTACGGAGTGG
genomic: CGCCTTCGCCGTCTCCCGCTCCAACGGCTCCCTCCGCCCCCTCTCCGCAGgttaccactt ... tcgcgtgcagAGGAAGCGGCTGCGGGAAGCGATTGTAGGGTGTCGAAGATTTACGGAGTGG
ctgggctcgtgaaccgatggtggttttactaacctgtgcatttgttcgcgtgcagAGGAAGCGGCTGCGGGAAGCGATTGTAGGGTGTCGAAGATTTACGGAGTGGCTGGCGTGATCAGGTTGCTCGCCG
tactaac putative branch site (score: 5)
tttgttc putative PPT
ttttactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaccacttactactcctcccctcaccgtgaagcgcgccgccgccggaatcgttccgtgcaaagcaaaggggaaaacaaatcgcggctatgttccggttttgttggttggtttgagtgctgggctcgtgaaccgatggtggttttactaacctgtgcatttgttcgcgtgcagAGGAAGCGGCTGCGGGAAGCGATTGTAGGGTGTCGAAGATTTACGGAGTGGCTGGCGTGATCAGGTTGCTCGCCG
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