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...cgttggttcaaaggtgtgcatcatgtcataaatatgccatccaaagtgtaaaattgtttgtggaatgctagacctcagttattttctttcatattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAACTACAATCTTGGAAGAACTTTAGGTATTGGCTCATTTGGAAAAGTGAA
species | Oryza sativa |
transcript | LOC_Os03g17980.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|58674399|gb|CK063085.1|CK063085
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|88316515|gb|CI622761.1|CI622761
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|58604235|gb|CK014763.1|CK014763
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|29627233|gb|CB632244.1|CB632244
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG GGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|88436650|gb|CI691382.1|CI691382
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|58659927|gb|CK048607.1|CK048607
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|88451891|gb|CI694666.1|CI694666
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|29663426|gb|CB659701.1|CB659701
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|117237395|gb|CT861888.1|CT861888
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|58670476|gb|CK059162.1|CK059162
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|33678911|gb|CF307150.1|CF307150
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: GGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|88593233|gb|CI709394.1|CI709394
genomic: GGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|58678394|gb|CK067081.1|CK067081
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|58605908|gb|CK033941.1|CK033941
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCAGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|58675377|gb|CK064064.1|CK064064
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|58672618|gb|CK061304.1|CK061304
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|38471514|gb|CF955645.1|CF955645
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|88391925|gb|CI683743.1|CI683743
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|58664329|gb|CK053015.1|CK053015
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: GACCACCACCCGATCGGCGGCGAGGTGCGGGGAGCTCCGTGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|58671476|gb|CK060162.1|CK060162
genomic: GACCACCACCCGATCGGCGGCGAGG-GCGGGGAGCTCCG-GCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|29616519|gb|CB621531.1|CB621531
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCAGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|58668341|gb|CK057027.1|CK057027
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|58680986|gb|CK069673.1|CK069673
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|29672730|gb|CB669005.1|CB669005
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|58598230|gb|CK008758.1|CK008758
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|58690725|gb|CK079412.1|CK079412
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|33797130|gb|CF324430.1|CF324430
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: GCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|58669222|gb|CK057908.1|CK057908
genomic: GCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|58658129|gb|CK046809.1|CK046809
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGGGGTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|88321968|gb|CI673117.1|CI673117
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAG TGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
genomic: TTGACCACCACCCGATCGGCGGCGAGGGCGGGGAGCTCCGGCGTGCTCAGgtaatccatc ... atattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGA
gtgtaaaattgtttgtggaatgctagacctcagttattttctttcatattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAACTACAATCTTGGAAGAACTTTAGGTATTGGCTCATTTGGAAAAGTGAA
ttattttctttcat CT-rich tract
ttattttctttcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgttggttcaaaggtgtgcatcatgtcataaatatgccatccaaagtgtaaaattgtttgtggaatgctagacctcagttattttctttcatattaccagTGAAAATGGATGGAAATGCTAAAGGCGGTGGGCATTCTGAGGCACTGAAGAACTACAATCTTGGAAGAACTTTAGGTATTGGCTCATTTGGAAAAGTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - -gtgcatc
- - - - - - - - - - - - - - - - - -gccatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaatgc