1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttcgcttctcctgctcccccgccttcttcagcgtttctctgcctccgccctcttccttcgcttcttctgatttctttcatgtacaagtagATGCAGGCGCCACCACGACTTTGATCGAGTTCTACTCCACCAGCTACAAGAGCTCCGCGCCATTGCCAGG
species | Oryza sativa |
transcript | LOC_Os03g17920.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACACGTTCCGATGCGCCG ATGCAGGCGCCACCACGACTTTGATCGAGTTCTACTCCACCAGCTACAAGAEST: gi|88425251|gb|CI564768.1|CI564768
genomic: GACACGTTCCGATGCGCCGgttcgcttct ... gtacaagtagATGCAGGCGCCACCACGACTTTGATCGAGTTCTACTCCACCAGCTACAAGA
EST: GCCGGAGTTCAACGAAGGGATCTCCTACATCGACACGTTCCGATGCGCCG ATGCAGGCGCCACCACGACTTTGATCGAGTTCTACTCCACCAGCTACAAGAEST: gi|88388351|gb|CI627890.1|CI627890
genomic: GCCGGAGTTCAACGAAGGGATCTCCTACATCGACACGTTCCGATGCGCCGgttcgcttct ... gtacaagtagATGCAGGCGCCACCACGACTTTGATCGAGTTCTACTCCACCAGCTACAAGA
EST: GCCGGAGTT-AACGAAGGGATATCCTACATCGACACGTTCCGATGCGCCG ATGCAGGCGCCACCAGGACTTTGATCGAGTTCTACTCCACCAGCTACAAGAEST: gi|88392883|gb|CI614765.1|CI614765
genomic: GCCGGAGTTCAACGAAGGGATCTCCTACATCGACACGTTCCGATGCGCCGgttcgcttct ... gtacaagtagATGCAGGCGCCACCACGACTTTGATCGAGTTCTACTCCACCAGCTACAAGA
EST: GCCGGAGTTCAACGAAGGGATCTCCTACATCGACACGTTCCGATGCGCCG ATGCAGGCGCCACCACGACTTTGATCGAGTTCTACTCCACCAGCTACAAGAEST: gi|88317451|gb|CI628100.1|CI628100
genomic: GCCGGAGTTCAACGAAGGGATCTCCTACATCGACACGTTCCGATGCGCCGgttcgcttct ... gtacaagtagATGCAGGCGCCACCACGACTTTGATCGAGTTCTACTCCACCAGCTACAAGA
EST: GCCGGAGTTCAACGAAGGGATCTCCTACATCGACACGTTCCGATGCGCCG ATGCAGGCGCCACCACGACTTTGATCGAGTTCTACTCCACCAGCTACAAGA
genomic: GCCGGAGTTCAACGAAGGGATCTCCTACATCGACACGTTCCGATGCGCCGgttcgcttct ... gtacaagtagATGCAGGCGCCACCACGACTTTGATCGAGTTCTACTCCACCAGCTACAAGA
tctctgcctccgccctcttccttcgcttcttctgatttctttcatgtacaagtagATGCAGGCGCCACCACGACTTTGATCGAGTTCTACTCCACCAGCTACAAGAGCTCCGCGCCATTGCCAGG
ttctgat putative branch site (score: 7)
ccctcttccttcgctt CT-rich tract
atttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgcttctcctgctcccccgccttcttcagcgtttctctgcctccgccctcttccttcgcttcttctgatttctttcatgtacaagtagATGCAGGCGCCACCACGACTTTGATCGAGTTCTACTCCACCAGCTACAAGAGCTCCGCGCCATTGCCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT