1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...actgtacaatgcatttctgcgcaagtattcatgctcttttcagtcattcatattcattagattttgaaaagtactgatgtttctttgcttttgttttcagGAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGTAGACTGTCTTCGCGCACTCGTTCTCGTGACCTAGAATATCTTTTCGGCA
species | Oryza sativa |
transcript | LOC_Os03g17710.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTG GAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGTEST: gi|88328329|gb|CI651340.1|CI651340
genomic: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTGgtgagcgtcc ... ttgttttcagGAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGT
EST: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTG GAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGTEST: gi|88290401|gb|CI665190.1|CI665190
genomic: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTGgtgagcgtcc ... ttgttttcagGAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGT
EST: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTG GAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGTEST: gi|66917360|gb|CX104208.1|CX104208
genomic: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTGgtgagcgtcc ... ttgttttcagGAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGT
EST: TCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTG GAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGTEST: gi|88329848|gb|CI651520.1|CI651520
genomic: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTGgtgagcgtcc ... ttgttttcagGAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGT
EST: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTG GAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGTEST: gi|88572064|gb|CI663635.1|CI663635
genomic: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTGgtgagcgtcc ... ttgttttcagGAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGT
EST: GCGGCGCCGGCGCCGGNGTACCGCTGCTTCCGCCGCATCCTCTATCTCTG GAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGTEST: gi|88422877|gb|CI615177.1|CI615177
genomic: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTGgtgagcgtcc ... ttgttttcagGAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGT
EST: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTG GAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGTEST: gi|88329824|gb|CI651494.1|CI651494
genomic: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTGgtgagcgtcc ... ttgttttcagGAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGT
EST: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTG GAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGTEST: gi|88332343|gb|CI656212.1|CI656212
genomic: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTGgtgagcgtcc ... ttgttttcagGAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGT
EST: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTG GAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGTEST: gi|88761659|gb|CI771215.1|CI771215
genomic: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTGgtgagcgtcc ... ttgttttcagGAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGT
EST: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTG GAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGTEST: gi|88307419|gb|CI642066.1|CI642066
genomic: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTGgtgagcgtcc ... ttgttttcagGAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGT
EST: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTG GAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGTEST: gi|88729424|gb|CI752934.1|CI752934
genomic: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTGgtgagcgtcc ... ttgttttcagGAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGT
EST: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTG GAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGTEST: gi|88333889|gb|CI645303.1|CI645303
genomic: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTGgtgagcgtcc ... ttgttttcagGAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGT
EST: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTG GAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGT
genomic: GCGGCGCCGGCGCCGGCGTACCGCTGCTTCCGCCGCATCCTCTATCTCTGgtgagcgtcc ... ttgttttcagGAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGT
attcatattcattagattttgaaaagtactgatgtttctttgcttttgttttcagGAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGTAGACTGTCTTCGCGCACTCGTTCTCGTGACCTAGAATATCTTTTCGGCA
tactgat putative branch site (score: 16)
tgtttctttgcttttg CT-rich tract
tattcattagatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgtacaatgcatttctgcgcaagtattcatgctcttttcagtcattcatattcattagattttgaaaagtactgatgtttctttgcttttgttttcagGAGATGCCTCGCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGTAGACTGTCTTCGCGCACTCGTTCTCGTGACCTAGAATATCTTTTCGGCA
- - - caatgca
- - - - - - -tttctgc
- - - - - - - - - - - - - -ttcatgc
- - - - - - - - - - - - - - - - - - - - - - cattcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgatg