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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtggtgttggttttttttttttttttgggtgggggggggggaattgtgacgatctgagtgttggtgacggtggatctgtggcgtttttgtgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAGCACACCACCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGT

Basic information

species Oryza sativa
transcript LOC_Os03g16980.5
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G044027_T02 (Zea mays), 3'ss of exon 1
-----------------------------------ggtg-gtgttggttttttttttttttttgggtgggggggggggaat-tgtgacgatctgagtgttggtgacggtggatctgtggcgtttttgtgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAGCACACCACCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGT
                                   |||| | |  |     ||        |  ||       |      |   |||   ||||| | |   ||||||  | | ||    |  | || ||| |||||| |||| ||| |||||||||||||||| |||||||||||| |  || | |   | ||||||||||||||||||| || ||||| ||||| ||||||||||
cgagctcaatccccagaggccagagccagctgctcggtgagcgccgcgcccttcgcccccctcaggccctcacgcttcgttgcttgatcgtctga-tttctctgacgggtgttttggtttggatctgggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCACATCTCCACCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGT

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G165357_T01 (Zea mays), 3'ss of exon 1
----------------------------ggtggtgttggttttttttttttttttgggtgggggggggggaattgtgacgatctgagtgttggtgacggtggatctgtggcgtt--tttgtgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAGCACACCACCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGT
                             |    |||| ||    |        | |   ||    |     ||     |       | |   ||||||  ||  | |||  |   | ||  || ||||||||||| ||| |||||||||||||||| | |||||||||| |  ||   |   | ||||||||||||||||||| |||||||| ||||| ||||||||||
gtgagtgccgcgccccgtcgcctcctcacgcttcgttgcttgcaatcaacgcgatcgtctggtctcgtcttgttccagtgtgtcatttctctctgacgggtgagatttggtttggatctggtcggaccagGTGCTCCACGCGATGGCGCAGAAGGAGACTAATGGCAGCAACGGCGATCACATCTCCACCCGCCCGCCGCCGACCCCCTCGCCCCTCCGCTTCTCCAAGT

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G044027_T01 (Zea mays), 3'ss of exon 1
ggtggtgttggttttttttttttttttgggtgggggggggggaat-tgtgacgatctgagtgttggtgacggtggatctgtggcgtttttgtgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAGCACACCACCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGT
|   | |  |     ||        |  ||       |      |   |||   ||||| | |   ||||||  | | ||    |  | || ||| |||||| |||| ||| |||||||||||||||| |||||||||||| |  || | |   | ||||||||||||||||||| || ||||| ||||| ||||||||||
gtgagcgccgcgcccttcgcccccctcaggccctcacgcttcgttgcttgatcgtctga-tttctctgacgggtgttttggtttggatctgggcggaccagGCGCTCCACGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCACATCTCCACCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgacgatctgagtgttggtgacggtggatctgtggcgtttttgtgcgtaccagGTGCTCGACGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAGCACACCACCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGT
                                       tttttgt  CT-rich tract
                                       tttttgt  TA-rich tract