1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgattttgccgggatccgatcgctggatctcgccgtatacgtggcccgatcgctcgacctggtctgattgttcgtgggtgtttgtgtgtgtgtgcagGCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG
species | Oryza sativa |
transcript | LOC_Os03g16980.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGTTCTTCCAG GCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCACEST: gi|58659240|gb|CK047920.1|CK047920
genomic: CCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGTTCTTCCAGgtgattttgc ... gtgtgtgcagGCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCAC
EST: CCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGTTCTTCCAG GCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCACEST: gi|313080404|gb|HO213412.1|HO213412
genomic: CCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGTTCTTCCAGgtgattttgc ... gtgtgtgcagGCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCAC
EST: CTCGCCGCTCCGGTTCTCCAAGTTCTTCCAG GCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCACEST: gi|30229035|gb|CB966926.1|CB966926
genomic: CTCGCCGCTCCGGTTCTCCAAGTTCTTCCAGgtgattttgc ... gtgtgtgcagGCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCAC
EST: CCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGTTCTTCCAG GCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCACEST: gi|30228342|gb|CB966233.1|CB966233
genomic: CCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGTTCTTCCAGgtgattttgc ... gtgtgtgcagGCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCAC
EST: CCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGTTCTTCCAG GCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCACEST: gi|29668646|gb|CB664921.1|CB664921
genomic: CCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGTTCTTCCAGgtgattttgc ... gtgtgtgcagGCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCAC
EST: CGCCCGACGACGACGCCCTCAGGCGCGTCCGGTTCTCCAAGTTCTTCCAG GCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCACEST: gi|58672962|gb|CK061648.1|CK061648
genomic: CGCCCGCCGCCGACGCCCTC-GCCGC-TCCGGTTCTCCAAGTTCTTCCAGgtgattttgc ... gtgtgtgcagGCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCAC
EST: CCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGTTCTTCCAG GCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCACEST: gi|58654932|gb|CK043612.1|CK043612
genomic: CCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGTTCTTCCAGgtgattttgc ... gtgtgtgcagGCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCAC
EST: CCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGTTCTTCCAG GCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCACEST: gi|58656016|gb|CK044696.1|CK044696
genomic: CCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGTTCTTCCAGgtgattttgc ... gtgtgtgcagGCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCAC
EST: CCAAGTTCTTCCAG GCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCGCGCACEST: gi|58659773|gb|CK048453.1|CK048453
genomic: CCAAGTTCTTCCAGgtgattttgc ... gtgtgtgcagGCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCAC
EST: CCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGTTCTTCCAG GCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCACEST: gi|30226636|gb|CB964528.1|CB964528
genomic: CCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGTTCTTCCAGgtgattttgc ... gtgtgtgcagGCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCAC
EST: CCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGTTCTTCCAG GCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCAC
genomic: CCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGTTCTTCCAGgtgattttgc ... gtgtgtgcagGCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCAC
ggcccgatcgctcgacctggtctgattgttcgtgggtgtttgtgtgtgtgtgcagGCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG
gtctgat putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattttgccgggatccgatcgctggatctcgccgtatacgtggcccgatcgctcgacctggtctgattgttcgtgggtgtttgtgtgtgtgtgcagGCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC