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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtttctcaattcctccgcaacctgacatttttctgttcttttctttggttcatggagtgccactatccaaattccccttcctttatcagttagattatggtaatgatgtagcactatcatggggaaaagagtttctgaacctttctttgttatgtttctagAAGGAAGAACCACCTAGACATAACAATGAAGAAATGGACCATGCACTTGCCCTTGCTCTTGCAGACGATGCCAAAAATACAAAAG

Basic information

species Oryza sativa
transcript LOC_Os03g16090.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29635593|gb|CB640602.1|CB640602
EST:     TGACGGCAGGAGAAGAGACCACGCTCTGGGAAGAACCAGTTAGACCAAAG                         AAGGAAGAACCACCTAGACATAACAATGAAGAAATGGACCATGCACTTGCC
genomic: TGACGGCAGGAGAAGAGACCACGCTCTGGGAAGAACCAGTTAGACCAAAGgtaatgtttc ... atgtttctagAAGGAAGAACCACCTAGACATAACAATGAAGAAATGGACCATGCACTTGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtagcactatcatggggaaaagagtttctgaacctttctttgttatgtttctagAAGGAAGAACCACCTAGACATAACAATGAAGAAATGGACCATGCACTTGCCCTTGCTCTTGCAGACGATGCCAAAAATACAAAAG
                                 cctttctttgttat  CT-rich tract
                                       tttgttat  TA-rich tract