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...tgtgtcacaatgtactgcatttgatctgcatatctgattgttgctctgtttatttgataactttgcatgattgctgatatgttcctgttttcacttacagTGCCAGCAATTTGCCTCCCTCACCAGGGGCACATCTACATGTGGAGTTCATTCCCATAAAAGAGGATGCACATGGTATACCTCACCCATGACCTCTGTAA
species | Oryza sativa |
transcript | LOC_Os03g16010.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCCGTGCCGCTGTCCAGTGCGAGAGCGCAGGCAGGCAGGCAGGCGCAG TGCCAGCAATTTGCCTCCCTCACCAGGGGCACATCTACATGTGGAGTTCATEST: gi|29629426|gb|CB634435.1|CB634435
genomic: TCGCCGTGCCGCTGTCCAGTGCGAGAGCGCAGGCAGGCAGGCAGGCGCAGgtaaaaacct ... tcacttacagTGCCAGCAATTTGCCTCCCTCACCAGGGGCACATCTACATGTGGAGTTCAT
EST: TCGCCGTGCCGCTGTCCAGTGCGAGAGCGCAGGCAGGCAGGCAGGCGCAG TGCCAGCAATTTGCCTCCCTCACCAGGGGCACATCTACATGTGGAGTTCATEST: gi|58669498|gb|CK058184.1|CK058184
genomic: TCGCCGTGCCGCTGTCCAGTGCGAGAGCGCAGGCAGGCAGGCAGGCGCAGgtaaaaacct ... tcacttacagTGCCAGCAATTTGCCTCCCTCACCAGGGGCACATCTACATGTGGAGTTCAT
EST: TCGCCGTGCCGCTGTCCAGTGCGAGAGCGCAGGCAGGCAGGCAGGCGCAG TGCCAGCAATTTGCCTCCCTCACCAGGGGCACATCTACATGTGGAGTTCATEST: gi|58672896|gb|CK061582.1|CK061582
genomic: TCGCCGTGCCGCTGTCCAGTGCGAGAGCGCAGGCAGGCAGGCAGGCGCAGgtaaaaacct ... tcacttacagTGCCAGCAATTTGCCTCCCTCACCAGGGGCACATCTACATGTGGAGTTCAT
EST: TCGCCGTGCCGCTGTCCAGTGCGAGAGCGCAGGCAGGCAGGCAGGCGCAG TGCCAGCAATTTGCCTCCCTCACCAGGGGCACATCTACATGTGGAGTTCATEST: gi|29629423|gb|CB634432.1|CB634432
genomic: TCGCCGTGCCGCTGTCCAGTGCGAGAGCGCAGGCAGGCAGGCAGGCGCAGgtaaaaacct ... tcacttacagTGCCAGCAATTTGCCTCCCTCACCAGGGGCACATCTACATGTGGAGTTCAT
EST: TCGCCGTGCCGCTGTCCAGTGCGAGAGCGCAGGCAGGCAGGCAGGCGCAG TGCCAGCAATTTGCCTCCCTCACCAGGGGCACATCTACATGTGGAGTTCATEST: gi|58653189|gb|CK041869.1|CK041869
genomic: TCGCCGTGCCGCTGTCCAGTGCGAGAGCGCAGGCAGGCAGGCAGGCGCAGgtaaaaacct ... tcacttacagTGCCAGCAATTTGCCTCCCTCACCAGGGGCACATCTACATGTGGAGTTCAT
EST: TCGCCGTGCCGCTGTCCAGTGCGAGAGCGCAGGCAGGCAGGCAGGCGCAG TGCCAGCAATTTGCCTCCCTCACCAGGGGCACATCTACATGTGGAGTTCAT
genomic: TCGCCGTGCCGCTGTCCAGTGCGAGAGCGCAGGCAGGCAGGCAGGCGCAGgtaaaaacct ... tcacttacagTGCCAGCAATTTGCCTCCCTCACCAGGGGCACATCTACATGTGGAGTTCAT
ctgtttatttgataactttgcatgattgctgatatgttcctgttttcacttacagTGCCAGCAATTTGCCTCCCTCACCAGGGGCACATCTACATGTGGAGTTCATTCCCATAAAAGAGGATGCACATGGTATACCTCACCCATGACCTCTGTAA
ttcctgttttcactt CT-rich tract
tatttgataacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgtcacaatgtactgcatttgatctgcatatctgattgttgctctgtttatttgataactttgcatgattgctgatatgttcctgttttcacttacagTGCCAGCAATTTGCCTCCCTCACCAGGGGCACATCTACATGTGGAGTTCATTCCCATAAAAGAGGATGCACATGGTATACCTCACCCATGACCTCTGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - tactgca
- - - - - - - - - - - -atctgca
- - - - - - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat