1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtactcctccgccgccgctagatccagcttctatttccctcccggaaagaggaaaagttgtttctccagcgcgcctggaggttgagatcgagtagatagatgtatgtaagtaacccgtgttcctttgttttttttttacctgtgcacccgcagCGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGGCGAGGTCGCAGTCCTACGAGGACAACATCAAGAAGATCGTCGACTTCAGCACT
species | Oryza sativa |
transcript | LOC_Os03g15590.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGG CGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGGCGAGGTCGCAGEST: gi|88314498|gb|CI606566.1|CI606566
genomic: AGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGGgtaagtactc ... gcacccgcagCGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGGCGAGGTCGCAG
EST: AGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGG CGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGGCGAGGTCGCAGEST: gi|33655762|gb|CF278376.1|CF278376
genomic: AGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGGgtaagtactc ... gcacccgcagCGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGGCGAGGTCGCAG
EST: AGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGG CGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGGCGAGGTCGCAGEST: gi|88353587|gb|CI632978.1|CI632978
genomic: AGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGGgtaagtactc ... gcacccgcagCGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGGCGAGGTCGCAG
EST: AGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGG CGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGGCGAGGTCGCAGEST: gi|88300381|gb|CI584800.1|CI584800
genomic: AGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGGgtaagtactc ... gcacccgcagCGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGGCGAGGTCGCAG
EST: AGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGG CGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGGCGAGGTCGCAGEST: gi|33655703|gb|CF278317.1|CF278317
genomic: AGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGGgtaagtactc ... gcacccgcagCGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGGCGAGGTCGCAG
EST: AGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGG CGTAGATTCGTGCTTTGGTACACGCGCCGGACTCCTGGGGCGAGGTCGCAGEST: gi|58597121|gb|CK007649.1|CK007649
genomic: AGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGGgtaagtactc ... gcacccgcagCGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGGCGAGGTCGCAG
EST: AGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGG CGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGGCGAGGTCGCAGEST: gi|218504774|gb|FG959636.1|FG959636
genomic: AGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGGgtaagtactc ... gcacccgcagCGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGGCGAGGTCGCAG
EST: AGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGG CGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGGGCGAGGTCGCA
genomic: AGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGGgtaagtactc ... gcacccgcagCGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGG-CGAGGTCGCA
gatgtatgtaagtaacccgtgttcctttgttttttttttacctgtgcacccgcagCGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGGCGAGGTCGCAGTCCTACGAGGACAACATCAAGAAGATCGTCGACTTCAGCACT
aagtaac putative branch site (score: 44)
tttgtttttttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtactcctccgccgccgctagatccagcttctatttccctcccggaaagaggaaaagttgtttctccagcgcgcctggaggttgagatcgagtagatagatgtatgtaagtaacccgtgttcctttgttttttttttacctgtgcacccgcagCGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGGCGAGGTCGCAGTCCTACGAGGACAACATCAAGAAGATCGTCGACTTCAGCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG