1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aatctgctagcgttcggttgtgtatctttgtgcatggcattggttttcctttgctaaatttgttctaggtgattgatgaatttactgttgttgtgcttagGAGGGGAAAGGCCTCAATTTAGGCTGTTCAACTATTCCTTGAGATGTTGGCACATAGTCTAGCAATCAATCCTTCAAGGGCTGCTCGATGTCCGGTTACT
species | Oryza sativa |
transcript | LOC_Os03g15033.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCCAGCGCCGCCGCTCTTGGTCCGCCGGACGCGCGGGTCACCTCCCACG GAGGGGAAAGGCCTCAATTTAGGCTGTTCAACTATTCCTTGAGATGTTGGCEST: gi|88724109|gb|CI749119.1|CI749119
genomic: GCCCAGCGCCGCCGCTCTTGGTCCGCCGGACGCGCGGGTCACCTCCCACGgtaaggctcc ... ttgtgcttagGAGGGGAAAGGCCTCAATTTAGGCTGTTCAACTATTCCTTGAGATGTTGGC
EST: GCCCAGCGCCGCCGCTCTTGGTCCGCCGGACGCGCGGGTCACCTCCCACG GAGGGGAAAGGCCTCAATTTAGGCTGTTCAACTATTCCTTGAGATGTTGGCEST: gi|38478216|gb|CF962349.1|CF962349
genomic: GCCCAGCGCCGCCGCTCTTGGTCCGCCGGACGCGCGGGTCACCTCCCACGgtaaggctcc ... ttgtgcttagGAGGGGAAAGGCCTCAATTTAGGCTGTTCAACTATTCCTTGAGATGTTGGC
EST: GCCCAGCGCCGCCGCTCTTGGTCCGCCGGACGCGCGGGTCACCTCCCACG GAGGGGAAAGGCCTCAATTTAGGCTGTTCAACTATTCCTTGAGATGTTGGCEST: gi|88741916|gb|CI764421.1|CI764421
genomic: GCCCAGCGCCGCCGCTCTTGGTCCGCCGGACGCGCGGGTCACCTCCCACGgtaaggctcc ... ttgtgcttagGAGGGGAAAGGCCTCAATTTAGGCTGTTCAACTATTCCTTGAGATGTTGGC
EST: GCCCAGCGCCGCCGCTCTTGGTCCGCCGGACGCGCGGGTCACCTCCCACG GAGGGGAAAGGCCTCAATTTAGGCTGTTCAACTATTCCTTGAGATGTTGGCEST: gi|88406572|gb|CI599065.1|CI599065
genomic: GCCCAGCGCCGCCGCTCTTGGTCCGCCGGACGCGCGGGTCACCTCCCACGgtaaggctcc ... ttgtgcttagGAGGGGAAAGGCCTCAATTTAGGCTGTTCAACTATTCCTTGAGATGTTGGC
EST: GCCCAGCGCCGCCGCTCTTGGTCCGCCGGACGCGCGGGTCACCTCCCACG GAGGGGAAAGGCCTCAATTTAGGCTGTTCAACTATTCCTTGAGATGTTGGC
genomic: GCCCAGCGCCGCCGCTCTTGGTCCGCCGGACGCGCGGGTCACCTCCCACGgtaaggctcc ... ttgtgcttagGAGGGGAAAGGCCTCAATTTAGGCTGTTCAACTATTCCTTGAGATGTTGGC
ttcctttgctaaatttgttctaggtgattgatgaatttactgttgttgtgcttagGAGGGGAAAGGCCTCAATTTAGGCTGTTCAACTATTCCTTGAGATGTTGGCACATAGTCTAGCAATCAATCCTTCAAGGGCTGCTCGATGTCCGGTTACT
taaatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatctgctagcgttcggttgtgtatctttgtgcatggcattggttttcctttgctaaatttgttctaggtgattgatgaatttactgttgttgtgcttagGAGGGGAAAGGCCTCAATTTAGGCTGTTCAACTATTCCTTGAGATGTTGGCACATAGTCTAGCAATCAATCCTTCAAGGGCTGCTCGATGTCCGGTTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- -ctgctag
- - - - - - - - - -gtgtatc
- - - - - - - - - - - - - - - tgcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgttg