1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gttgttacagaattcgtttgttttattggactaaatcaatagttttgaatggttttggcaactaaatggtcttactaaaatatgatgcttgtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCGGTGCATCTACTG
species | Oryza sativa |
transcript | LOC_Os03g14450.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88301205|gb|CI594731.1|CI594731
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|58661980|gb|CK050660.1|CK050660
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|5701699|gb|AU063506.2|AU063506
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88695201|gb|CI739239.1|CI739239
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|13895987|gb|AU182323.1|AU182323
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88351968|gb|CI625968.1|CI625968
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTC-ACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|117233450|gb|CT848145.1|CT848145
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAAATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88352980|gb|CI630158.1|CI630158
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88315321|gb|CI613590.1|CI613590
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGGTGGTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|4878131|gb|AU062430.1|AU062430
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88427267|gb|CI586815.1|CI586815
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88333377|gb|CI642414.1|CI642414
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCEST: gi|88430123|gb|CI565136.1|CI565136
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|27553945|gb|CA997845.1|CA997845
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|29678593|gb|CB674868.1|CB674868
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88744176|gb|CI767536.1|CI767536
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88443516|gb|CI596983.1|CI596983
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGG-CCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCCTAGEST: gi|88692735|gb|CI736310.1|CI736310
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTG-CCTAG
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88360198|gb|CI610312.1|CI610312
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88388974|gb|CI595208.1|CI595208
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88425382|gb|CI567102.1|CI567102
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|56158086|gb|C72608.2|C72608
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88300608|gb|CI587412.1|CI587412
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88398014|gb|CI585517.1|CI585517
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88724710|gb|CI747969.1|CI747969
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88570746|gb|CI662119.1|CI662119
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88728882|gb|CI752392.1|CI752392
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88393823|gb|CI621318.1|CI621318
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|58600258|gb|CK010786.1|CK010786
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGNCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88695504|gb|CI737542.1|CI737542
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88388874|gb|CI592762.1|CI592762
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88390763|gb|CI610989.1|CI610989
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88372233|gb|CI619563.1|CI619563
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|4880550|gb|AU064849.1|AU064849
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88696367|gb|CI739942.1|CI739942
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88354348|gb|CI624738.1|CI624738
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88721933|gb|CI743445.1|CI743445
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88370957|gb|CI595069.1|CI595069
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88421393|gb|CI569238.1|CI569238
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88424448|gb|CI608034.1|CI608034
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCACATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88571245|gb|CI662618.1|CI662618
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|4879156|gb|AU063455.1|AU063455
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTNCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88724437|gb|CI747696.1|CI747696
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|33685463|gb|CF313702.1|CF313702
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: CGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACACGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGEST: gi|88424498|gb|CI608084.1|CI608084
genomic: CGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCAC-CGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAG
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|27553947|gb|CA997847.1|CA997847
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCTCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88300718|gb|CI589710.1|CI589710
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|32947868|gb|BP184440.1|BP184440
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88726581|gb|CI750236.1|CI750236
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88740039|gb|CI763547.1|CI763547
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|58658595|gb|CK047275.1|CK047275
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|428929|gb|D25085.1|D25085
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88692197|gb|CI735772.1|CI735772
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGANAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88730308|gb|CI753922.1|CI753922
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88348501|gb|CI629990.1|CI629990
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|568321|gb|D39165.1|D39165
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88390958|gb|CI592866.1|CI592866
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|38565671|gb|CK085124.1|CK085124
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCEST: gi|88347145|gb|CI631225.1|CI631225
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
EST: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAG GTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
genomic: GCGTGAAGGCCCGCCAGATCTTCGACAGCCGTGGCAACCCCACCGTCGAGgtacgccgcg ... gtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGC
tgaatggttttggcaactaaatggtcttactaaaatatgatgcttgtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCGGTGCATCTACTG
tactaaa putative branch site (score: 1)
ttactaaaatatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgttacagaattcgtttgttttattggactaaatcaatagttttgaatggttttggcaactaaatggtcttactaaaatatgatgcttgtgttgccagGTTGATATTTGCTGCTCGGATGGAACATTTGCGAGGGCTGCTGTGCCTAGCGGTGCATCTACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
gttgtta
- - - - - - - - - - - - - - - - aaatcaa
- - - - - - - - - - - - - - - - - - - - - - -tgaatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - caactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgct