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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgccgcgcagctcgccgccctccctcccacagatcgatttcgccgagctctgattcacttatttatcgctttttttgcgtggctcccctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCGATTCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTG

Basic information

species Oryza sativa
transcript LOC_Os03g13970.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g13970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G165926_T01 (Zea mays), 3'ss of exon 1
gttcgccgcgcagctcgccgccctccctcccacagatcgatttcgccgagctctgattcacttatttatcgctttttttgcgtggctcccctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCGATTCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTG
|| || |  ||  |  || ||| |  ||| | | ||           || ||| ||| | || | | ||| |   |  ||  ||| |  ||| |  |||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||| |||||||| |||||||| ||||||||||||||||| |
gtacgacatgcgccctgctgccgtttctcgctccga-----------gaactccgatcc-ctaactaatctcccatcgtgt-tggttttccttt--gcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTACGCTCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCG

upper sequence: LOC_Os03g13970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G147671_T02 (Zea mays), 3'ss of exon 1
gttcgccgcgcagctcgccgccctccctcccacagatcgatttcgccgagctctgattcacttatttatcgctttttttgcgtggctcccctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCGATTCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTG
|| || |  ||  |  || ||| |  ||| | | |   ||  |   ||| | |  | | |  |        ||    | |  |||||  || ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||| |||||||| |||||||||||||| || |
gtacgacatgcgccctgctgccgtttctcgctccg--tgaact---cgatccccaactaatctc-------ctcccctcgattggctttcccct--gcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACGCCCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATATGCG

upper sequence: LOC_Os03g13970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA01G36990.1 (Glycine max), 3'ss of exon 1
-----------gttcgccgcgcagctcgccgccctccctcccacag--atcgatttcgccgagctctgattcacttatttatcgctttttttgcgtggctcccctctcc---gcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCGATTCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTG
            ||| || ||    | |    |  |   |  |     | | ||||    |   | |  || |  |     | ||  ||||| | | |      | ||     ||||||||||||||||| || ||||| || || |||||||| ||||| || ||||| || || ||||| || ||||| || ||||| || || ||||| || |
gtaatccccgatttcccctcgtgcgttgatttcaacaagcttatcattaccaatttttagggttttttcttgatgttgcggtagcagttttttcatcgtattgatttcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGTGATTACTCTCCTTCTCGATTTCAAGCTCAAGCAGACGCTGTGAATCTCATTTGCG

upper sequence: LOC_Os03g13970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA11G08290.1 (Glycine max), 3'ss of exon 1
-----------gttcgccgcgcagctcgccgccctccctcccacagatcgatttcgccgagctctgattcacttatttatcgctttt-tttg--cgtggctcccctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCGATTCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTG
            ||| || ||    | |    |   |  ||| || | | |||||   | | | | ||| |  |     |  | | | ||||   ||    |     ||  ||||||||||||||||| || ||||| || || |||||||| ||||| || ||||| || || ||||| || ||||| || ||||| ||||| ||||| || |
gtaatcccagatttcccctcgtgcgttgatttcagacagccc-cataccaatttc-tagggtttttattgatgttgcggtaacatatgtttgattgtattgctttcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTACTCTCCTTCTCGATTTCAAGCTCAAGCAGACGCTGTCAATCTCATATGCG

upper sequence: LOC_Os03g13970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: AT4G38630.1 (Arabidopsis thaliana), 3'ss of exon 1
gttcgccgcgcagctcgccgccctccctcccacagatcgatttcgccgagctctgattcacttatttatcgctttttttgcgtggct-cccctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCGATTCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTG
         |    |  ||    |  ||    |  |||   ||||  ||    |||| |||   || |  ||||||| |    |       ||    | ||||||| ||||| || || |||||||| ||||||||||| ||||| || ||||| |||||  | || ||||| ||  | || || || || ||  | || |
---------gtgattttccaa--ttacttgtgcttatc---ttcgttga----tgatccac--gttgaatgctttttctcatcgatgatttcttgttgtagGCGACTATGATATGTATCGACAACTCCGAGTGGATGCGAAACGGAGATTACTCTCCGTCTAGGTTACAGGCGCAAACGGAAGCTGTTAATCTTCTTTGCG

upper sequence: LOC_Os03g13970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S14_318V6.2 (Physcomitrella patens), 3'ss of exon 1
-----------------------------------------------------------------------------------------------gttcgccgcgcagctcgccgccctccctcccacagatcgatttcgccgagctctgattcacttatttatcgctttttttgcgtggctcccct-ctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCGATTCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTG
                                                                                               ||| |         |  | |   |   |     ||  |  |  ||   |  | || |      | ||      | ||   |||        |  |   |||||||| ||| ||||||| |||||||| |||||||||||||||||||| || || ||  |  | || || ||||| || || ||  | ||||| || || |
gtaagtggaacatgggacgtagtgtattagggttatttgtaggtgcgaattggtttcttaggattcagtgatagtctgccgatcttgaatttctggtttgtttttttcgttactgagttgattgagggagcactgtg-cgtgcatttttggtgggtagagttggaagctgttgaacgttatatgggtgttttacagGCGACCATGGTCTGCATGGACAACTCAGAGTGGATGCGGAACGGCGATTATTCACCTACTAGGTTTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCG

upper sequence: LOC_Os03g13970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S14_318V6.1 (Physcomitrella patens), 3'ss of exon 1
gttcgccgcgcagctcgccgccctccctcccacagatcgatttcgccgagctctgattcacttatttatcgctttttttgcgtggctcccct-ctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCGATTCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTG
||| |         |  | |   |   |     ||  |  |  ||   |  | || |      | ||      | ||   |||        |  |   |||||||| ||| ||||||| |||||||| |||||||||||||||||||| || || ||  |  | || || ||||| || || ||  | ||||| || || |
gtttgtttttttcgttactgagttgattgagggagcactgtg-cgtgcatttttggtgggtagagttggaagctgttgaacgttatatgggtgttttacagGCGACCATGGTCTGCATGGACAACTCAGAGTGGATGCGGAACGGCGATTATTCACCTACTAGGTTTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCG

upper sequence: LOC_Os03g13970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: EFJ17485 (Selaginella moellendorffii), 3'ss of exon 1
gttcgccgcgcagctcgccgccctccctcccacagatcgatttcgccgagctctgattcacttatttatcgctttttttgcgtggctcccctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCG---ATTCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTG
                                                |||||    || |  || | || |       || |  || | ||     |||||||||||||||||||||||||| || ||||||||||| || || |||||||  ||| || |   ||||||| | || || || || ||||| || ||||   
---------------------------------------------gtaagctc---ctcgcg-atctttcacgcca--ggcctatcttctcttgtgccagGCGACGATGATCTGCATAGACAATTCCGAGTGGATGCGAAATGGGGACTACTATCCGACGAGTAGATTCCAGTCCCAAGCTGATGCTGTCAATCTTATCT---

upper sequence: LOC_Os03g13970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: EFJ28815 (Selaginella moellendorffii), 3'ss of exon 1
gttcgccgcgcagctcgccgccctccctcccacagatcgatttcgccgagctctgattcacttatttatcgctttttttgcgtggctcccctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCG---ATTCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTG
                                                |||||    || |  || | || |       || |  || | ||     |||||||||||||||||||||||||| || ||||||||||| || || |||||||  ||| || |   ||||||| | || ||||| || ||||| || ||||   
---------------------------------------------gtaagctc---ctcgcg-atctttcacgcca--ggcctatcttctcttgtgccagGCGACGATGATCTGCATAGACAATTCCGAGTGGATGCGAAATGGGGACTACTATCCGACGAGTAGATTCCAGTCCCAAGCCGATGCTGTCAATCTTATCT---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88351142|gb|CI623364.1|CI623364
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCCGACGATGATCTGCATAGAAAACTCGGAGTGGATGCGGAACGGCGACTA
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagG-CGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTA
EST: gi|88314956|gb|CI610015.1|CI610015
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88763078|gb|CI772634.1|CI772634
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATNATCTGCATAGACNACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|163919850|gb|EG710352.1|EG710352
EST:     AGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: AGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|33657883|gb|CF280497.1|CF280497
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|33654150|gb|CF276764.1|CF276764
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88721373|gb|CI744672.1|CI744672
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGNGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88445093|gb|CI589571.1|CI589571
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGGGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88693555|gb|CI737130.1|CI737130
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88390322|gb|CI605775.1|CI605775
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88391146|gb|CI595400.1|CI595400
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88745425|gb|CI768785.1|CI768785
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|58663975|gb|CK052661.1|CK052661
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|33679625|gb|CF307864.1|CF307864
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88358175|gb|CI605100.1|CI605100
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88354858|gb|CI614136.1|CI614136
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGGGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88357310|gb|CI622159.1|CI622159
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGATGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88826558|gb|CI777123.1|CI777123
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|33681541|gb|CF309780.1|CF309780
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88434013|gb|CI586891.1|CI586891
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88390341|gb|CI607377.1|CI607377
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAATTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88414977|gb|CI601809.1|CI601809
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88346731|gb|CI657282.1|CI657282
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGAATAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88736526|gb|CI760034.1|CI760034
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88723553|gb|CI747063.1|CI747063
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88735528|gb|CI759036.1|CI759036
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|33654616|gb|CF277230.1|CF277230
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|2309803|gb|C25958.1|C25958
EST:     GCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: GCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88362712|gb|CI608861.1|CI608861
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAAATCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88354146|gb|CI637712.1|CI637712
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|33681744|gb|CF309983.1|CF309983
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88425160|gb|CI564677.1|CI564677
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88356912|gb|CI620800.1|CI620800
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88742964|gb|CI766472.1|CI766472
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88360077|gb|CI610191.1|CI610191
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88742045|gb|CI765553.1|CI765553
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88718520|gb|CI742030.1|CI742030
EST:     GGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: GGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88729610|gb|CI751413.1|CI751413
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88736188|gb|CI759696.1|CI759696
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88394930|gb|CI607657.1|CI607657
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|88417172|gb|CI576246.1|CI576246
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: gi|86890984|gb|CI305857.1|CI305857
EST:     CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG                         GCGACGATAATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgagctctgattcacttatttatcgctttttttgcgtggctcccctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCGATTCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTG
     ctctgat  putative branch site (score: 4)
                                        ctcccctctccgc  putative PPT
          attcacttatttat  TA-rich tract