1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttcgccgcgcagctcgccgccctccctcccacagatcgatttcgccgagctctgattcacttatttatcgctttttttgcgtggctcccctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCGATTCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTG
species | Oryza sativa |
transcript | LOC_Os03g13970.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCCGACGATGATCTGCATAGAAAACTCGGAGTGGATGCGGAACGGCGACTAEST: gi|88314956|gb|CI610015.1|CI610015
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagG-CGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTA
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88763078|gb|CI772634.1|CI772634
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATNATCTGCATAGACNACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|163919850|gb|EG710352.1|EG710352
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: AGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|33657883|gb|CF280497.1|CF280497
genomic: AGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|33654150|gb|CF276764.1|CF276764
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88721373|gb|CI744672.1|CI744672
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGNGACTACEST: gi|88445093|gb|CI589571.1|CI589571
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGGGACTACEST: gi|88693555|gb|CI737130.1|CI737130
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88390322|gb|CI605775.1|CI605775
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88391146|gb|CI595400.1|CI595400
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88745425|gb|CI768785.1|CI768785
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|58663975|gb|CK052661.1|CK052661
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|33679625|gb|CF307864.1|CF307864
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88358175|gb|CI605100.1|CI605100
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88354858|gb|CI614136.1|CI614136
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGGGACTACEST: gi|88357310|gb|CI622159.1|CI622159
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGATGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88826558|gb|CI777123.1|CI777123
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|33681541|gb|CF309780.1|CF309780
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88434013|gb|CI586891.1|CI586891
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88390341|gb|CI607377.1|CI607377
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAATTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88414977|gb|CI601809.1|CI601809
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88346731|gb|CI657282.1|CI657282
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGAATACEST: gi|88736526|gb|CI760034.1|CI760034
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88723553|gb|CI747063.1|CI747063
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88735528|gb|CI759036.1|CI759036
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|33654616|gb|CF277230.1|CF277230
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|2309803|gb|C25958.1|C25958
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: GCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88362712|gb|CI608861.1|CI608861
genomic: GCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAAATCGGAGTGGATGCGGAACGGCGACTACEST: gi|88354146|gb|CI637712.1|CI637712
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|33681744|gb|CF309983.1|CF309983
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88425160|gb|CI564677.1|CI564677
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88356912|gb|CI620800.1|CI620800
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88742964|gb|CI766472.1|CI766472
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88360077|gb|CI610191.1|CI610191
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88742045|gb|CI765553.1|CI765553
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88718520|gb|CI742030.1|CI742030
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: GGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88729610|gb|CI751413.1|CI751413
genomic: GGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88736188|gb|CI759696.1|CI759696
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88394930|gb|CI607657.1|CI607657
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|88417172|gb|CI576246.1|CI576246
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACEST: gi|86890984|gb|CI305857.1|CI305857
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
EST: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAG GCGACGATAATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
genomic: CCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGgttcgccgcg ... ctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTAC
ccgagctctgattcacttatttatcgctttttttgcgtggctcccctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCGATTCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTG
ctctgat putative branch site (score: 51)
ctcccctctccgc putative PPT
attcacttatttat TA-rich tract