1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtagcattgcaaactgctgaattgttccaaataaagtaatttgctgtcagtactcagcaactcaatgcttactgatgttttatctccttaccttttaaagGCTGAATTTGACATGCTTTCTGAAGATTTTTCCGAATGTCTAAATGACTTGGGCATGCCAG
species | Oryza sativa |
transcript | LOC_Os03g13850.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGAGGGGCCGCCGTCGCGCTACGGGCGCCGCACCGTCCGGCTCCCTGAAG GCTGAATTTGACATGCTTTCTGAAGATTTTTCCGAATGTCTAAATGACTTG
genomic: AGAGGGGCCGCCGTCGCGCTACGGGCGCCGCACCGTCCGGCTCCCTGAAGgtaccgatgt ... ccttttaaagGCTGAATTTGACATGCTTTCTGAAGATTTTTCCGAATGTCTAAATGACTTG
gtcagtactcagcaactcaatgcttactgatgttttatctccttaccttttaaagGCTGAATTTGACATGCTTTCTGAAGATTTTTCCGAATGTCTAAATGACTTGGGCATGCCAG
tccttac putative branch site (score: 2)
tgttttatctccttac CT-rich tract
atgttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcattgcaaactgctgaattgttccaaataaagtaatttgctgtcagtactcagcaactcaatgcttactgatgttttatctccttaccttttaaagGCTGAATTTGACATGCTTTCTGAAGATTTTTCCGAATGTCTAAATGACTTGGGCATGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - cattgca
- - - - - - - tgctgaa
- - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - -tgctgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - cagcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttac