1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcatttcaagaagaatactagtctgtgacttgctgcggtgcctagtggctcctagtttacgatatcctaatccttggtcatatctgacgcttgcttgcagCGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGAGACGAGTTCAGGCAAGCACGTCCCAAGGGCGTTGTTCGTCGACCTGGAG
species | Oryza sativa |
transcript | LOC_Os03g11970.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAACTATACTGGCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAG CGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGAEST: gi|88733922|gb|CI755358.1|CI755358
genomic: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAGgttcttctcg ... ttgcttgcagCGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGA
EST: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAG CGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTAACCGAEST: gi|29640705|gb|CB645714.1|CB645714
genomic: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAGgttcttctcg ... ttgcttgcagCGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGA
EST: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAG CGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGAEST: gi|88308811|gb|CI654094.1|CI654094
genomic: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAGgttcttctcg ... ttgcttgcagCGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGA
EST: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAG CGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGAEST: gi|88737243|gb|CI760751.1|CI760751
genomic: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAGgttcttctcg ... ttgcttgcagCGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGA
EST: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAG CGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGAEST: gi|88356918|gb|CI620806.1|CI620806
genomic: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAGgttcttctcg ... ttgcttgcagCGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGA
EST: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAG CGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGAEST: gi|87005660|gb|CI287484.1|CI287484
genomic: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAGgttcttctcg ... ttgcttgcagCGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGA
EST: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAG CGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGAEST: gi|88825254|gb|CI775819.1|CI775819
genomic: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAGgttcttctcg ... ttgcttgcagCGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGA
EST: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAG CGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGAEST: gi|88740826|gb|CI763341.1|CI763341
genomic: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAGgttcttctcg ... ttgcttgcagCGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGA
EST: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAG CGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGAEST: gi|88742014|gb|CI765522.1|CI765522
genomic: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAGgttcttctcg ... ttgcttgcagCGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGA
EST: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAG CGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGAEST: gi|88732880|gb|CI756057.1|CI756057
genomic: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAGgttcttctcg ... ttgcttgcagCGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGA
EST: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCC-AC CGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGAEST: gi|88294849|gb|CI604721.1|CI604721
genomic: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAGgttcttctcg ... ttgcttgcagCGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGA
EST: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAG CGAC-CAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGAEST: gi|88391691|gb|CI600880.1|CI600880
genomic: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAGgttcttctcg ... ttgcttgcagCGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGA
EST: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAG CGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGAEST: gi|27545580|gb|CA763794.2|CA763794
genomic: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAGgttcttctcg ... ttgcttgcagCGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGA
EST: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAG CGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGAEST: gi|88735974|gb|CI759482.1|CI759482
genomic: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAGgttcttctcg ... ttgcttgcagCGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGA
EST: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAG CGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGAEST: gi|29638414|gb|CB643423.1|CB643423
genomic: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAGgttcttctcg ... ttgcttgcagCGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGA
EST: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAG CGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGAEST: gi|4715111|gb|AU056228.1|AU056228
genomic: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAGgttcttctcg ... ttgcttgcagCGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGA
EST: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAG CGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGAEST: gi|88736135|gb|CI759643.1|CI759643
genomic: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAGgttcttctcg ... ttgcttgcagCGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGA
EST: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAG CGACANAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCANCGA
genomic: GAACTATACTGCCTCGAGCATGGCATCCAGCCGGACGGCCTCATGCCCAGgttcttctcg ... ttgcttgcagCGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGA
tggctcctagtttacgatatcctaatccttggtcatatctgacgcttgcttgcagCGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGAGACGAGTTCAGGCAAGCACGTCCCAAGGGCGTTGTTCGTCGACCTGGAG
cttgctt CT-rich tract
tagttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatttcaagaagaatactagtctgtgacttgctgcggtgcctagtggctcctagtttacgatatcctaatccttggtcatatctgacgcttgcttgcagCGACACAACTCCTGGAATTGCAAGGGATGCATTCAACACGTTCTTCAGCGAGACGAGTTCAGGCAAGCACGTCCCAAGGGCGTTGTTCGTCGACCTGGAG
- - - -aagaagaa
- - - - - - - - - - - ctgtgac
- - - - - - - - - - - - - - - tgctgcg
- - - - - - - - - - - - - - - - - - -gtgccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacgc