1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtagactcggggggtgcgtccgtgtttgtggctccggttttactggctggtttggtttggttcggttgagctgatgaagtggtggtgttgcttttggttgggttgcagATCCTGGGGAAGGCCGAGTTCTTGAATCCCGGAGGCAGCGTGAAGGACCGTGTGGCAGTTAAGATCATCGAAGAG
species | Oryza sativa |
transcript | LOC_Os03g11660.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACACGCCCCTCATCCGCATCAACAGCCTCTCCGACGCCACAGGGTGCGAG ATCCTGGGGAAGGCCGAGTTCTTGAATCCCGGAGGCAGCGTGAAGGACCGTEST: gi|88398453|gb|CI595854.1|CI595854
genomic: ACACGCCCCTCATCCGCATCAACAGCCTCTCCGACGCCACAGGGTGCGAGgtagactcgg ... tgggttgcagATCCTGGGGAAGGCCGAGTTCTTGAATCCCGGAGGCAGCGTGAAGGACCGT
EST: ACACGCCCCTCATCCGCATCAACAGCCTCTCCGACGCCACAGGGTGCGAG ATCCTGGGGAAGGCCGAGTTCTTGAATCC-GGAGGCAGCGTGAAGGACCGT
genomic: ACACGCCCCTCATCCGCATCAACAGCCTCTCCGACGCCACAGGGTGCGAGgtagactcgg ... tgggttgcagATCCTGGGGAAGGCCGAGTTCTTGAATCCCGGAGGCAGCGTGAAGGACCGT
ggtttggttcggttgagctgatgaagtggtggtgttgcttttggttgggttgcagATCCTGGGGAAGGCCGAGTTCTTGAATCCCGGAGGCAGCGTGAAGGACCGTGTGGCAGTTAAGATCATCGAAGAG
agctgat putative branch site (score: 9)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagactcggggggtgcgtccgtgtttgtggctccggttttactggctggtttggtttggttcggttgagctgatgaagtggtggtgttgcttttggttgggttgcagATCCTGGGGAAGGCCGAGTTCTTGAATCCCGGAGGCAGCGTGAAGGACCGTGTGGCAGTTAAGATCATCGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA