1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaatttactcttgttgtttgaaccttgcttaggtttgtaactgctgtgttgtgccttctgcgtttttgcaattctaacagcggcatccattctcctacagACGGGTGACACCCTCATACAGCTCTACAACAATTTCATCACTGATTTCGAGACGAAGATCAATCTTCTCAAACTTGCGCATTTCGCGGTCATCGCTTCGC
species | Oryza sativa |
transcript | LOC_Os03g11570.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCAGCTCACCCTCAAGCTCGACCACTTCCTCCAGCTCCCTGCCGCGCAG ACGGGTGACACCCTCATACAGCTCTACAACAATTTCATCACTGATTTCGAGEST: gi|29673013|gb|CB669288.1|CB669288
genomic: ACCAGCTCACCCTCAAGCTCGACCACTTCCTCCAGCTCCCTGCCGCGCAGgtttcccacc ... tctcctacagACGGGTGACACCCTCATACAGCTCTACAACAATTTCATCACTGATTTCGAG
EST: ACCAGCTCACCCTCGAGCTCGACCACTTCCTCCAGCTCCCTGCCGCGCAG ACGGGTGACACCCTCATACGGCTCTACAACAATTTCATCACTGATTTCGAGEST: gi|88358241|gb|CI605166.1|CI605166
genomic: ACCAGCTCACCCTCAAGCTCGACCACTTCCTCCAGCTCCCTGCCGCGCAGgtttcccacc ... tctcctacagACGGGTGACACCCTCATACAGCTCTACAACAATTTCATCACTGATTTCGAG
EST: ACCAGCTCACCCTCAAGCTCGACCACTTCCTCCAGCTCCCTGCCGCGCAG ACGGGTGACACCCTCATACAGCTCTACAACAATTTCATCACTGATTTCGAGEST: gi|33683496|gb|CF311735.1|CF311735
genomic: ACCAGCTCACCCTCAAGCTCGACCACTTCCTCCAGCTCCCTGCCGCGCAGgtttcccacc ... tctcctacagACGGGTGACACCCTCATACAGCTCTACAACAATTTCATCACTGATTTCGAG
EST: ACCAGCTCACCCTCAAGCTCGACCACTTCCTCCAGCTCCCTGCCGCGCAG ACGGGTGACACCCTCATACAGCTCTACAACAATTTCATCACTGATTTCGAGEST: gi|11443013|gb|BF430900.1|BF430900
genomic: ACCAGCTCACCCTCAAGCTCGACCACTTCCTCCAGCTCCCTGCCGCGCAGgtttcccacc ... tctcctacagACGGGTGACACCCTCATACAGCTCTACAACAATTTCATCACTGATTTCGAG
EST: ACCAGCTCACCCTCAAGCTCGACCACTTCCTCCAGCTCCCCGCCGCGCAG ACGGGTGACACCCTCATACAGCTCTACAACAATTTCATCACTGATTTCGAGEST: gi|117217002|gb|CT845303.1|CT845303
genomic: ACCAGCTCACCCTCAAGCTCGACCACTTCCTCCAGCTCCCTGCCGCGCAGgtttcccacc ... tctcctacagACGGGTGACACCCTCATACAGCTCTACAACAATTTCATCACTGATTTCGAG
EST: ACCAGCTCACCCTCAAGCTCGACCACTTCCTCCAGCTCCCCGCCGCGCAG ACGGGTGACACCCTCATACAGCTCTACAACAATTTCATCACTGATTTCGAGEST: gi|58652430|gb|CK041110.1|CK041110
genomic: ACCAGCTCACCCTCAAGCTCGACCACTTCCTCCAGCTCCCTGCCGCGCAGgtttcccacc ... tctcctacagACGGGTGACACCCTCATACAGCTCTACAACAATTTCATCACTGATTTCGAG
EST: ACCAGCTCACCCTCAAGCTCGACCACTTCCTCCAGCTCCCTGCCGCGCAG ACGGGTGACACCCTCATACAGCTCTACAACAATTTCATCACTGATTTCGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCACTTCCTCCAGCTCCCTGCCGCGCAGgtttcccacc ... tctcctacagACGGGTGACACCCTCATACAGCTCTACAACAATTTCATCACTGATTTCGAG
gtgttgtgccttctgcgtttttgcaattctaacagcggcatccattctcctacagACGGGTGACACCCTCATACAGCTCTACAACAATTTCATCACTGATTTCGAGACGAAGATCAATCTTCTCAAACTTGCGCATTTCGCGGTCATCGCTTCGC
ttctaac putative branch site (score: 13)
tccattctcct putative PPT
aattctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatttactcttgttgtttgaaccttgcttaggtttgtaactgctgtgttgtgccttctgcgtttttgcaattctaacagcggcatccattctcctacagACGGGTGACACCCTCATACAGCTCTACAACAATTTCATCACTGATTTCGAGACGAAGATCAATCTTCTCAAACTTGCGCATTTCGCGGTCATCGCTTCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - -cttgttg
- - - - - - - - - - - -cttgctt
- - - - - - - - - - - - - - - - - - - -actgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatcca