1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgcgtgctccgtgatttatcctctcttgttctagctcttttacggcttcgcttttggtggttttttttggtgtaattttttttatcagccttcgccaactgttcccccccgtagGGGCGAGAGGGATTCGTCGGCCACGGTCCGCAGCCGCAATGGAGCAAGATCAGGGCGTTGCTGCCGCGGCGGCGTCGGAGAATCCAAGCGCCGGCCAGGG
species | Oryza sativa |
transcript | LOC_Os03g11200.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GNGACCCCTCGGCACCTCATCCTCCCCGANGCGCGCGCCTCCGCTCGCCG GGGCGAGAGGGATTCGTCGGCCACGGTCCGCAGCCGCAATGGAGCAAGATCEST: gi|58668992|gb|CK057678.1|CK057678
genomic: GCGACCCCTCGGCACCTCATCCTCCCCGACGCGCGCGCCTCCGCTCGCCGgtgcgtgctc ... ccccccgtagGGGCGAGAGGGATTCGTCGGCCACGGTCCGCAGCCGCAATGGAGCAAGATC
EST: CGACCCCTCGGCACCTCATCCTCCCCGTACGCGCGCGCCTCCGCTCGCCG GGGCGAGAGGGATTCGTCGGCCACGGTCCGCAGCCGCAATGGAGCAAGATCEST: gi|88588607|gb|CI706436.1|CI706436
genomic: CGACCCCTCGGCACCTCATCCTCCCCG-ACGCGCGCGCCTCCGCTCGCCGgtgcgtgctc ... ccccccgtagGGGCGAGAGGGATTCGTCGGCCACGGTCCGCAGCCGCAATGGAGCAAGATC
EST: GCGACCCCTCGGCACCTCATCCTCCCCGACGCGCGCGCCTCCGCTCGCCG GGGCGAGAGGGATTCGTCGGCCACGGTCCGCAGCCGCAATGGAGCAAGATCEST: gi|58673869|gb|CK062555.1|CK062555
genomic: GCGACCCCTCGGCACCTCATCCTCCCCGACGCGCGCGCCTCCGCTCGCCGgtgcgtgctc ... ccccccgtagGGGCGAGAGGGATTCGTCGGCCACGGTCCGCAGCCGCAATGGAGCAAGATC
EST: GCGACCCCTCGGCACCTCATCCTCCCCGACGCGCGCGCCTCCGCTCGCCG GGGCGAGAGGGATTCGTCGGCCACGGTCCGCAGCCGCAATGGAGCAAGATCEST: gi|88377815|gb|CI637949.1|CI637949
genomic: GCGACCCCTCGGCACCTCATCCTCCCCGACGCGCGCGCCTCCGCTCGCCGgtgcgtgctc ... ccccccgtagGGGCGAGAGGGATTCGTCGGCCACGGTCCGCAGCCGCAATGGAGCAAGATC
EST: GCGAACCCTCGGCACCTCATCCTCCCCGACGCGCGCGCCTCCGCTCGCCG GGGCGAGAGGGATTCGTCGGCCACGGTCCGCAGCCGCAATGGAGCAAGATCEST: gi|58657364|gb|CK046044.1|CK046044
genomic: GCGACCCCTCGGCACCTCATCCTCCCCGACGCGCGCGCCTCCGCTCGCCGgtgcgtgctc ... ccccccgtagGGGCGAGAGGGATTCGTCGGCCACGGTCCGCAGCCGCAATGGAGCAAGATC
EST: GCGACCCCTCGGCACCTCATCCTCCCCGACGCGCGCGCCTCCGCTCGCCG GGGCGAGAGGGATTCGTCGGCCACGGTCCGCAGCCGCAATGGAGCAAGATCEST: gi|86902250|gb|CI302281.1|CI302281
genomic: GCGACCCCTCGGCACCTCATCCTCCCCGACGCGCGCGCCTCCGCTCGCCGgtgcgtgctc ... ccccccgtagGGGCGAGAGGGATTCGTCGGCCACGGTCCGCAGCCGCAATGGAGCAAGATC
EST: GCGACCCCTCGGCACCTCATCCTCCCCGACGCGCGCGCCTCCGCTCGCCG GGGCGAGAGGGATTCGTCGGCCACGGTCCGCAGCCGCAATGGAGCAAGATCEST: gi|88448452|gb|CI693832.1|CI693832
genomic: GCGACCCCTCGGCACCTCATCCTCCCCGACGCGCGCGCCTCCGCTCGCCGgtgcgtgctc ... ccccccgtagGGGCGAGAGGGATTCGTCGGCCACGGTCCGCAGCCGCAATGGAGCAAGATC
EST: GCGACCCCTCGGNACCTCATCCTCCCCGACGCGCGCGCCTCCGCTCGCCG GGGCGAGAGGGATTCGTCGGCCACGGTCCGCAGCCGCAATGGAGCAAGATCEST: gi|88580649|gb|CI697592.1|CI697592
genomic: GCGACCCCTCGGCACCTCATCCTCCCCGACGCGCGCGCCTCCGCTCGCCGgtgcgtgctc ... ccccccgtagGGGCGAGAGGGATTCGTCGGCCACGGTCCGCAGCCGCAATGGAGCAAGATC
EST: GCGACCCCTCGGCACCTCATCCTCCCCGACGCGCGCGCCTCCGCTCGCCG GGGCGAGAGGGATTCGTCGGCCACGGTCCGCAGNCGCAATGGAGCAAGATC
genomic: GCGACCCCTCGGCACCTCATCCTCCCCGACGCGCGCGCCTCCGCTCGCCGgtgcgtgctc ... ccccccgtagGGGCGAGAGGGATTCGTCGGCCACGGTCCGCAGCCGCAATGGAGCAAGATC
gttttttttggtgtaattttttttatcagccttcgccaactgttcccccccgtagGGGCGAGAGGGATTCGTCGGCCACGGTCCGCAGCCGCAATGGAGCAAGATCAGGGCGTTGCTGCCGCGGCGGCGTCGGAGAATCCAAGCGCCGGCCAGGG
ctgttcccccccgt CT-rich tract
ttttggtgtaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtgctccgtgatttatcctctcttgttctagctcttttacggcttcgcttttggtggttttttttggtgtaattttttttatcagccttcgccaactgttcccccccgtagGGGCGAGAGGGATTCGTCGGCCACGGTCCGCAGCCGCAATGGAGCAAGATCAGGGCGTTGCTGCCGCGGCGGCGTCGGAGAATCCAAGCGCCGGCCAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA