1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ccagcaaactcatgtttttttcatgaattttcatgcaattgttccactgtaaaattcacgaggcttaccatcaatgcacatttttctgtaccgatttcagGAGAAGCTGCGAGTTGCTGTGCTAGTGTCAAAGGCTGCACTTCAGTTCATCCAAG
species | Oryza sativa |
transcript | LOC_Os03g10640.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCAACCTCGACAAGCGATCCGAGGCCGCCGCCATGAAGCGATCCAACCAG GAGAAGCTGCGAGTTGCTGTGCTAGTGTCAAAGGCTGCACTTCAGTTCATCEST: gi|88582857|gb|CI700300.1|CI700300
genomic: CCAACCTCGACAAGCGATCCGAGGCCGCCGCCATGAAGCGATCCAACCAGgtaactgccg ... ccgatttcagGAGAAGCTGCGAGTTGCTGTGCTAGTGTCAAAGGCTGCACTTCAGTTCATC
EST: CCACCTCGACAAGCCGATCCGAGGCCGCCGCCATGAAGCGATCCAACCAG GAGAAGCTGNGAGTTGCTGTGCTAGTGTCAAAGGCTGCACTTCAGTTCATCEST: gi|88588656|gb|CI706492.1|CI706492
genomic: CAACCTCGACAAGC-GATCCGAGGCCGCCGCCATGAAGCGATCCAACCAGgtaactgccg ... ccgatttcagGAGAAGCTGCGAGTTGCTGTGCTAGTGTCAAAGGCTGCACTTCAGTTCATC
EST: CCAACCTCGACAAGCGATCCGAGGCCGCCGCCATGAAGCGATCCAACCAG GAGAAGCTGCGAGTTGCTGTGCTAGTGTCAAAGGCTGCACTTCAGTTCATCEST: gi|88429297|gb|CI690197.1|CI690197
genomic: CCAACCTCGACAAGCGATCCGAGGCCGCCGCCATGAAGCGATCCAACCAGgtaactgccg ... ccgatttcagGAGAAGCTGCGAGTTGCTGTGCTAGTGTCAAAGGCTGCACTTCAGTTCATC
EST: CCAACCTCGACAAGCGATCCGAGGCCGCCGCCATGAAGCGATCCAACCAG GAGAAGCTGCGAGTTGCTGTGCTAGTGTCAAAGGCTGCACTTCAGTTCATCEST: gi|88744664|gb|CI768024.1|CI768024
genomic: CCAACCTCGACAAGCGATCCGAGGCCGCCGCCATGAAGCGATCCAACCAGgtaactgccg ... ccgatttcagGAGAAGCTGCGAGTTGCTGTGCTAGTGTCAAAGGCTGCACTTCAGTTCATC
EST: CCAACCTCGACAAGCGATCCGAGGCCGCCGCCATGAAGCGATCCAACCAG GAGAAGCTGCGAGTTGCTGTGCTAGTGTCAAAGGCTGCACTTCAGTTCATCEST: gi|88584282|gb|CI701825.1|CI701825
genomic: CCAACCTCGACAAGCGATCCGAGGCCGCCGCCATGAAGCGATCCAACCAGgtaactgccg ... ccgatttcagGAGAAGCTGCGAGTTGCTGTGCTAGTGTCAAAGGCTGCACTTCAGTTCATC
EST: CCAACCTCGACAAGCGATCCGAGGCCGCCGCCATGAAGCGATCCAACCAG GAGAAGCTGCGAGTTGCTGTGCTAGTGTCAAAGGCTGCACTTCAGTTCATCEST: gi|88442991|gb|CI694407.1|CI694407
genomic: CCAACCTCGACAAGCGATCCGAGGCCGCCGCCATGAAGCGATCCAACCAGgtaactgccg ... ccgatttcagGAGAAGCTGCGAGTTGCTGTGCTAGTGTCAAAGGCTGCACTTCAGTTCATC
EST: CCAACCTCGACAAGCGATCCGAGGCCGCCGCCATGAAGCGATCCAACCAG GAGAAGCTGCGAGTTGCTGTGCTAGTGTCAAAGGCTGCACTTCAGTTCATC
genomic: CCAACCTCGACAAGCGATCCGAGGCCGCCGCCATGAAGCGATCCAACCAGgtaactgccg ... ccgatttcagGAGAAGCTGCGAGTTGCTGTGCTAGTGTCAAAGGCTGCACTTCAGTTCATC
actgtaaaattcacgaggcttaccatcaatgcacatttttctgtaccgatttcagGAGAAGCTGCGAGTTGCTGTGCTAGTGTCAAAGGCTGCACTTCAGTTCATCCAAG
ggcttac putative branch site (score: 3)
aaaattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccagcaaactcatgtttttttcatgaattttcatgcaattgttccactgtaaaattcacgaggcttaccatcaatgcacatttttctgtaccgatttcagGAGAAGCTGCGAGTTGCTGTGCTAGTGTCAAAGGCTGCACTTCAGTTCATCCAAG
-cagcaaa
- - - - -tcatgtt
- - - - - - - - - tttcatg
- - - - - - - - - - - - - - -ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgca