1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttcgttgatgtcgcgcgcgtccccgatcgatcgatcttacgcgctggagagagttccagttttttttcttttttgggcaaggtttgttcgatgaatttgacggtgttcatgttgttgcggcggcggcggcggcgtgcagGCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTG
species | Oryza sativa |
transcript | LOC_Os03g09140.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGCCATCATCACCCGCTTCATGTACGACAAGCTCGACGCCACCTACCAT GCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGAEST: gi|33684735|gb|CF312974.1|CF312974
genomic: CGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAGgttcgttgat ... cggcgtgcagGCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGA
EST: CGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAG GCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGAEST: gi|33682508|gb|CF310747.1|CF310747
genomic: CGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAGgttcgttgat ... cggcgtgcagGCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGA
EST: CGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAG GCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGAEST: gi|58692272|gb|CK080959.1|CK080959
genomic: CGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAGgttcgttgat ... cggcgtgcagGCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGA
EST: CGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAG GCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTEST: gi|33688710|gb|CF316949.1|CF316949
genomic: CGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAGgttcgttgat ... cggcgtgcagGCGACGATCGGGATCGATTTCCTCTCCAAGACGATGT
EST: CGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAG GCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGA
genomic: CGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAGgttcgttgat ... cggcgtgcagGCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGA
tgttcgatgaatttgacggtgttcatgttgttgcggcggcggcggcggcgtgcagGCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTG
atttgac putative branch site (score: 5)
atgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgttgatgtcgcgcgcgtccccgatcgatcgatcttacgcgctggagagagttccagttttttttcttttttgggcaaggtttgttcgatgaatttgacggtgttcatgttgttgcggcggcggcggcggcgtgcagGCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT