1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tccatgatgtgtcaattaagctcaaacatggggatgataagtatatttgcttgctggattgtctgacattctatcactgtgcttctattctgactttcagGACTACAACTTTCTTGATTACCATGAGAAAGTTATTGATGGCTTCTATGACATTTTTGGCCCCTCTATGGAATCATCAAAGCAAGGGAAGATGCCATCAC
species | Oryza sativa |
transcript | LOC_Os03g06410.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGTCCGGGACGACGAGCAAACCGCGGATGCGCTCTCCCGCCGCTACCGG GACTACAACTTTCTTGATTACCATGAGAAAGTTATTGATGGCTTCTATGACEST: gi|33677605|gb|CF305844.1|CF305844
genomic: CCGTCCGGGACGACGAGCAAACCGCGGATGCGCTCTCCCGCCGCTACCGGgtgagtcgcc ... tgactttcagGACTACAACTTTCTTGATTACCATGAGAAAGTTATTGATGGCTTCTATGAC
EST: CCGTCCGGGACGACGAGCAAACCGCGGATGCGCTCTCCCGCCGCTACCGG GACTACAACTTTCTTGATTACCATGAGAAAGTTATTGATGGCTTCTATGACEST: gi|58656152|gb|CK044832.1|CK044832
genomic: CCGTCCGGGACGACGAGCAAACCGCGGATGCGCTCTCCCGCCGCTACCGGgtgagtcgcc ... tgactttcagGACTACAACTTTCTTGATTACCATGAGAAAGTTATTGATGGCTTCTATGAC
EST: CCGTCCGGGACGACGAGCAAACCGCGGATGCGCTCTCCCGCCGCTACCGG GACTACAACTTTCTTGATTACCATGAGAAAGTTATTGATGGCTTCTATGAC
genomic: CCGTCCGGGACGACGAGCAAACCGCGGATGCGCTCTCCCGCCGCTACCGGgtgagtcgcc ... tgactttcagGACTACAACTTTCTTGATTACCATGAGAAAGTTATTGATGGCTTCTATGAC
tttgcttgctggattgtctgacattctatcactgtgcttctattctgactttcagGACTACAACTTTCTTGATTACCATGAGAAAGTTATTGATGGCTTCTATGACATTTTTGGCCCCTCTATGGAATCATCAAAGCAAGGGAAGATGCCATCAC
ttctgac putative branch site (score: 8)
cttctattct CT-rich tract
attctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccatgatgtgtcaattaagctcaaacatggggatgataagtatatttgcttgctggattgtctgacattctatcactgtgcttctattctgactttcagGACTACAACTTTCTTGATTACCATGAGAAAGTTATTGATGGCTTCTATGACATTTTTGGCCCCTCTATGGAATCATCAAAGCAAGGGAAGATGCCATCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- catgatg
- - - - - - - - - - -tcaaaca
- - - - - - - - - - - - - - - - gatgata
- - - - - - - - - - - - - - - - - - - - - - - -tgcttgc