1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggatgtatgtgagtgggggctggggaaagtttgtagctggagtagaagaattagccattttccgccatttgttaacacatagcactgttttgtcatccagCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACGATAACTCCGCTACTGATTCAAAGGACTTGCGTGCTAAG
species | Oryza sativa |
transcript | LOC_Os03g05740.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGACGCCGGCTAGCATCGCCGGCGATGGGTTGCTCCTCCTCCGTGCCAG CTCGAAGCACTGGAGGGTTGAACAATATTAGCAACGATAACTCCGCTACTGEST: gi|300216317|gb|HO088102.1|HO088102
genomic: TCGACGCCGGCTAGCATCGCCGGCGATGGGTTGCTCCTCCTCCGTGCCAGgttctctctc ... tgtcatccagCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACGATAACTCCGCTACTG
EST: TCGACGCCGGCTAGCATCGCCGGCGATGGGTTGCTCCTCCTCCGTGCCAG CTCGAAGCACTGGAGGGTTGAACAATACTAGCAACGATAACTCCGCTACTG
genomic: TCGACGCCGGCTAGCATCGCCGGCGATGGGTTGCTCCTCCTCCGTGCCAGgttctctctc ... tgtcatccagCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACGATAACTCCGCTACTG
aagaattagccattttccgccatttgttaacacatagcactgttttgtcatccagCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACGATAACTCCGCTACTGATTCAAAGGACTTGCGTGCTAAG
tgttaac putative branch site (score: 42)
ctgtttt putative PPT
atttgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatgtatgtgagtgggggctggggaaagtttgtagctggagtagaagaattagccattttccgccatttgttaacacatagcactgttttgtcatccagCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACGATAACTCCGCTACTGATTCAAAGGACTTGCGTGCTAAG
- atgtatg
- - - - - - - -ggggctg
- - - - - - - - - - - - - - - - - -gctggag
- - - - - - - - - - - - - - - - - - - - - tagaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcactgt