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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtaacacgccatcgccaaactcccgctcgcatcttaccattacccaattcggcaattccttcgccgcagcactaaaatttctccgcgtgctcgaccagGGCAGCGGCGAGATCCCGGTCACGGAAATGTTCGGCACCTTCGCGCTATCGGTGGGCGCCGCG

Basic information

species Oryza sativa
transcript LOC_Os03g03370.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g03370.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G382534_T01 (Zea mays), 3'ss of exon 1
gtaggtaacacgccatcgc-caaactcccgctcgcatcttaccattac-ccaattcg-gcaattccttcgccgcagcactaaaatttctccgcg-tgctcgaccagGGCAGCGGCGAGATCCCGGTCACGGAAATGTTCGGCACCTTCGCGCTATCGGTGGGCGCCGCG
         ||| | |||| |  |     |  ||   | |  | |  | ||  | || |    ||| |  ||||           ||||  ||| |||| | ||||||| |||||| ||||||||| ||||| ||| ||||||| |||||||| |||||||||||||||
--gtacggtacgtcgtcgcacgtaacgaggggcgtcgcgtcgcgtcgcgccggtccgtgtgtgtccattcccgctcatgggtcgattctgtgcggtgcttggccagGGCGGCGGCGCGATCCCGGTGACGGAGATGGTCGGCACGTTCGCGCTCTCGGTGGGCGCCGCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaattcggcaattccttcgccgcagcactaaaatttctccgcgtgctcgaccagGGCAGCGGCGAGATCCCGGTCACGGAAATGTTCGGCACCTTCGCGCTATCGGTGGGCGCCGCG
                          cactaaa  putative branch site (score: 2)
                           actaaaattt  TA-rich tract