1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgtcaacttttctttttcccccctctctgcgaatgctaatactgcgccttcccatggcgagatttcgttctgatgggttctccctgtcgttgttgctgctgctgatgcagATTGCTGCCTCGCGCTCTGGTG
species | Oryza sativa |
transcript | LOC_Os03g03180.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAACCTCTGGCACTCCGATCTCACCAACACCATCCAGGCCGACTTCCCAT ATTGCTGCCTCGCGCTCTGGTGEST: gi|58602683|gb|CK013211.1|CK013211
genomic: CAACCTCTGGCACTCCGATCTCACCAGCACCATCCAGGCCGACTTCCCATgtatgtcaac ... gctgatgcagATTGCTGCCTCGCGCTCTGGTG
EST: AACCTCTGGCACTCCGATCTCGACCAACACCATCCAGGCCGACTTCCCAT ATTGCTGCCTCGCGCTCTGGTGEST: gi|2310999|gb|C27154.1|C27154
genomic: AACCTCTGGCACTCCGATCTC-ACCAGCACCATCCAGGCCGACTTCCCATgtatgtcaac ... gctgatgcagATTGCTGCCTCGCGCTCTGGTG
EST: CAACCTCTGGCACTCCGATCTCACCAGCACCATCCAGGCCGACTTCCCAT ATTGCTGCCTCGCGCTCTGGTG
genomic: CAACCTCTGGCACTCCGATCTCACCAGCACCATCCAGGCCGACTTCCCATgtatgtcaac ... gctgatgcagATTGCTGCCTCGCGCTCTGGTG
ggcgagatttcgttctgatgggttctccctgtcgttgttgctgctgctgatgcagATTGCTGCCTCGCGCTCTGGTG
tgctgat putative branch site (score: 69)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcaacttttctttttcccccctctctgcgaatgctaatactgcgccttcccatggcgagatttcgttctgatgggttctccctgtcgttgttgctgctgctgatgcagATTGCTGCCTCGCGCTCTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC