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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gggaactttgtagcttaccgtatgcttgaattgtatagtgatggagacatgggcatcagtctcatttgagtcgtttgcacttttgggagaatttttgcagGTCCAATTGATCAGAATCGAATGTAGAGTACCTGAGTACGGATGGACGACACAGAAGGTGTTCCATTTCATGAACTTTATTGTGAATGGAG

Basic information

species Oryza sativa
transcript LOC_Os03g02850.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02850.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G426306_T01 (Zea mays), 3'ss of exon 2
gggaactttgtagcttaccgtatg--cttgaattgtatagtgatggagacatgggcatcagtctcatttgagtcgtttgcacttttgggag--aattt---ttgcagGTCCAATTGATCAGAATCGAATGTAGAGTACCTGAGTACGGATGGACGACACAGAAGGTGTTCCATTTCATGAACTTTATTGTGAATGGAG
       |  | | ||    | ||  ||||        | |||  ||| |  |  |   |   ||    |||   | || | |  |||     |||||   ||| ||||| |||| ||||||||||| || || || || ||||| |||||||| || |||||||||||||||||  | |||||  |||||||||| |
------gtgctggtttgatttgtggtcttgtgggacgaattgagagaggcg-gcactgtaacgtccgccgagaattctgaattcgtggtgtttaatttctattgtagGTCAAATTAATCAGAATCGAGTGCAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAATGGCG

upper sequence: LOC_Os03g02850.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G055462_T01 (Zea mays), 3'ss of exon 2
gggaactttgtagcttaccgtatg--cttgaattgtatagtgatggagacatgggcatcagtctcatttgagtcgtttgcacttttgggag--aattt---ttgcagGTCCAATTGATCAGAATCGAATGTAGAGTACCTGAGTACGGATGGACGACACAGAAGGTGTTCCATTTCATGAACTTTATTGTGAATGGAG
       |  | | ||    | ||  ||||        | |||  ||| |  |  ||  | | ||    |||   | || | |   ||     |||||   |||||||||||||| ||||||||||| || || || || ||||| |||||||| || |||||||||||||||||  | |||||  ||||||| || |
------gtgctggtttgatttgtggtcttgtgggacgaattgagagaggcg-gcacagtaatgtccgccgagaattctgaattcgcggtgtttaatttctattgcagGTCCAATTAATCAGAATCGAGTGCAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCG

upper sequence: LOC_Os03g02850.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G171469_T01 (Zea mays), 3'ss of exon 1
--gggaactttgtagcttaccgtatgcttgaattgtatagtgatggagacatgggcatcagtctcatttgagtcgtttgcacttttggga-gaatttttgcagGTCCAATTGATCAGAATCGAATGTAGAGTACCTGAGTACGGATGGACGACACAGAAGGTGTTCCATTTCATGAACTTTATTGTGAATGGAG
  ||| ||  | || | ||  || |  |  || |||  | |||| || |    |  |   ||   |   |  || || |  | ||||    ||||||   ||||||||| |||| |||||||| ||  | || |||||||| || ||||| || |||||||||||||||||| | ||| | ||||| ||||| |
gcggggaccatatatcatagtgtgtattccaaatgtg-attgatagaaattgagatagtggt--taccggtctcattagttcatttgacctgaatttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacatgggcatcagtctcatttgagtcgtttgcacttttgggagaatttttgcagGTCCAATTGATCAGAATCGAATGTAGAGTACCTGAGTACGGATGGACGACACAGAAGGTGTTCCATTTCATGAACTTTATTGTGAATGGAG
                                              tttttgc  CT-rich tract
                                          agaattttt  TA-rich tract