1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attgatcatagttttgtgcagtgtagtaataatgctgttactttggcagcgagatgatttgcattgttggtttgctgagaaactctatcactgcgtgcagGTTACACGATGTTATCCACAGTGAGAAGCGCATATATCTTGTCTTTGAGTATCTGGATCTGGACCTAAAGAAGTTCATGGACTCTTGTCCAGAGTTTGCG
species | Oryza sativa |
transcript | LOC_Os03g02680.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCCGCGAGATCTCGCTCCTCAAGGAGATGCATCACGGCAACATCGTCAG GTTACACGATGTTATCCACAGTGAGAAGCGCATATATCTTGTCTTTGAGTAEST: gi|58682943|gb|CK071630.1|CK071630
genomic: ATCCGCGAGATCTCGCTCCTCAAGGAGATGCATCACGGCAACATCGTCAGgtcctctcta ... ctgcgtgcagGTTACACGATGTTATCCACAGTGAGAAGCGCATATATCTTGTCTTTGAGTA
EST: ATCCGCGAGATCTCGCTCCTCAAGGAGATGCATCACGGGAACATCGTCAG GTTACACGATGTTATCCACAGTGAGAAGCGCATATATCTTGTCTTTGAGTAEST: gi|88254231|gb|CI352857.1|CI352857
genomic: ATCCGCGAGATCTCGCTCCTCAAGGAGATGCATCACGGCAACATCGTCAGgtcctctcta ... ctgcgtgcagGTTACACGATGTTATCCACAGTGAGAAGCGCATATATCTTGTCTTTGAGTA
EST: ATCCGCGAGATCTCGCTCCTCAAGGAGATGCATCACGGCAACATCGTCAG GTTACACGATGTTATCCACAGTGAGAAGCGCATATATCTTGTCTTTGAGTAEST: gi|218491447|gb|FG947046.1|FG947046
genomic: ATCCGCGAGATCTCGCTCCTCAAGGAGATGCATCACGGCAACATCGTCAGgtcctctcta ... ctgcgtgcagGTTACACGATGTTATCCACAGTGAGAAGCGCATATATCTTGTCTTTGAGTA
EST: CGGCAACATCGTCAG GTTACACGATGTTATCCACAGTGAGAAGCGCATATATCTTGTCTTTGAGTAEST: gi|58600107|gb|CK010635.1|CK010635
genomic: CGGCAACATCGTCAGgtcctctcta ... ctgcgtgcagGTTACACGATGTTATCCACAGTGAGAAGCGCATATATCTTGTCTTTGAGTA
EST: ATCCGCGAGATCTCGCTCCTCAAGGAGATGCATCACGGCAACATCGTCAG GTTACACGATGTTATCCACAGTGAGAAGCGCATATATCTTGTCTTTGAGTAEST: gi|428547|gb|D24699.1|D24699
genomic: ATCCGCGAGATCTCGCTCCTCAAGGAGATGCATCACGGCAACATCGTCAGgtcctctcta ... ctgcgtgcagGTTACACGATGTTATCCACAGTGAGAAGCGCATATATCTTGTCTTTGAGTA
EST: ATCCGCGAGATCTCGCTCCTCAAGGAGATGCATCACGGCAACATCGTCAG GTTACACGATGTTATCCACAGTGAGAAGCGCATATATCTTGTCTTTGAGTA
genomic: ATCCGCGAGATCTCGCTCCTCAAGGAGATGCATCACGGCAACATCGTCAGgtcctctcta ... ctgcgtgcagGTTACACGATGTTATCCACAGTGAGAAGCGCATATATCTTGTCTTTGAGTA
gcagcgagatgatttgcattgttggtttgctgagaaactctatcactgcgtgcagGTTACACGATGTTATCCACAGTGAGAAGCGCATATATCTTGTCTTTGAGTATCTGGATCTGGACCTAAAGAAGTTCATGGACTCTTGTCCAGAGTTTGCG
atgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgatcatagttttgtgcagtgtagtaataatgctgttactttggcagcgagatgatttgcattgttggtttgctgagaaactctatcactgcgtgcagGTTACACGATGTTATCCACAGTGAGAAGCGCATATATCTTGTCTTTGAGTATCTGGATCTGGACCTAAAGAAGTTCATGGACTCTTGTCCAGAGTTTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - tttgtgc
- - - - - - - - - - - - - - - - tgctgtt
- - - - - - - - - - - - - - - - - - - - - -tggcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - gatgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctga