Sequence
atgc intronic sequence ATGC exonic sequencegttagactcagtcaccccgtccgtcccttggcttccaacacctactattatgatggagtacttcggtttgacaagtagcagctactgatactcctcctgccgtgccgtgcgtgcagGGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTG
Basic information
species | Oryza sativa |
transcript | LOC_Os03g01150.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os03g01150.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G374779_T04 (Zea mays), 3'ss of exon 1
gttagactcagtcaccccgtccgtcccttggcttccaacacctactattatgatggagtacttcggtttgacaagtagcagctactgatactcctcctgccgtgccgtgcgtgcagGGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTG------------------------
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gtaggattctcctctcctctcctctcccaggcagcaacaagctgg-ataatagtgga-tattatatgattctatctatc--ctgctgacggattgaaactggaaccgtg---gcagGGATTGGGGACCAGTGCGTCAACCATGGCGTTGCCAAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88400076|gb|CI588380.1|CI588380EST: CTTCGTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACG GGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTC
genomic: CTTCGTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGgttagactca ... gtgcgtgcagGGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcggtttgacaagtagcagctactgatactcctcctgccgtgccgtgcgtgcagGGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTG
tactgat putative branch site (score: 2)