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...aggggaccatgggttaatcgattccagcgcgcgcgcacacagcttcgctcttcttgttcttgatgtctcgctgacgccacacctctgcctgttctgccagGGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGAGAAATGGTGGGAG
species | Oryza sativa |
transcript | LOC_Os02g58030.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAG GGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGAEST: gi|58658512|gb|CK047192.1|CK047192
genomic: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGgtgcattgtc ... gttctgccagGGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGA
EST: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAG TEST: gi|58658512|gb|CK047192.1|CK047192
genomic: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGgtgcattgtc ... gttctgccag-
EST: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAG TEST: gi|88393661|gb|CI621156.1|CI621156
genomic: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGgtgcattgtc ... gttctgccag-
EST: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAG GGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGAEST: gi|88589638|gb|CI708436.1|CI708436
genomic: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGgtgcattgtc ... gttctgccagGGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGA
EST: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAG GGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGAEST: gi|88395062|gb|CI609378.1|CI609378
genomic: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGgtgcattgtc ... gttctgccagGGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGA
EST: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAG GGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGAEST: gi|88370332|gb|CI587722.1|CI587722
genomic: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGgtgcattgtc ... gttctgccagGGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGA
EST: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAG GGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGAEST: gi|88372250|gb|CI619580.1|CI619580
genomic: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGgtgcattgtc ... gttctgccagGGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGA
EST: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAG GGAGGTACCCAAGGAGGTGCACAACAACTTGGACACGGGGGCTCAGGATGAEST: gi|88339003|gb|CI677822.1|CI677822
genomic: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGgtgcattgtc ... gttctgccagGGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGA
EST: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAG GGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGAEST: gi|88739909|gb|CI761419.1|CI761419
genomic: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGgtgcattgtc ... gttctgccagGGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGA
EST: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAG GGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGAEST: gi|88365345|gb|CI679979.1|CI679979
genomic: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGgtgcattgtc ... gttctgccagGGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGA
EST: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAG GGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGAEST: gi|88728403|gb|CI751913.1|CI751913
genomic: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGgtgcattgtc ... gttctgccagGGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGA
EST: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAG GGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGAEST: gi|88315437|gb|CI613706.1|CI613706
genomic: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGgtgcattgtc ... gttctgccagGGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGA
EST: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAG GGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGAEST: gi|58669154|gb|CK057840.1|CK057840
genomic: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGgtgcattgtc ... gttctgccagGGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGA
EST: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAG GGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGAEST: gi|88355166|gb|CI651869.1|CI651869
genomic: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGgtgcattgtc ... gttctgccagGGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGA
EST: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAG GGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGAEST: gi|58663247|gb|CK051933.1|CK051933
genomic: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGgtgcattgtc ... gttctgccagGGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGA
EST: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAG GGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGA
genomic: AAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGgtgcattgtc ... gttctgccagGGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGA
cgctcttcttgttcttgatgtctcgctgacgccacacctctgcctgttctgccagGGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGAGAAATGGTGGGAG
cgctgac putative branch site (score: 12)
cctctgcctgttct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggggaccatgggttaatcgattccagcgcgcgcgcacacagcttcgctcttcttgttcttgatgtctcgctgacgccacacctctgcctgttctgccagGGAGGTACCCAAGGAGGTGTACAACAACTTGGACACGGGGGCTCAGGATGAGAAATGGTGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - ccatggg
- - - - - - - - - - - - - - - - -cgcacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgcct