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...tacctaacaccttacagtgctactttattgataacaagtattcctacccatcatgtgaccattcttttaactatgttgttttccatcaccgtgttatcagGTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGTGTTGGTGCTCGTTTTGGCCCCACTATAGAGTCAAAGGAAAAGCATGCCA
species | Oryza sativa |
transcript | LOC_Os02g57710.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTCCTC GTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGTEST: gi|88727666|gb|CI749468.1|CI749468
genomic: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTCCTCgtacgcccct ... gtgttatcagGTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGT
EST: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTCCTC GTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGTEST: gi|88360695|gb|CI647705.1|CI647705
genomic: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTCCTCgtacgcccct ... gtgttatcagGTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGT
EST: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTCCTC GTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGTEST: gi|29632358|gb|CB637367.1|CB637367
genomic: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTCCTCgtacgcccct ... gtgttatcagGTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGT
EST: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTCCTC GTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGTEST: gi|38475978|gb|CF960111.1|CF960111
genomic: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTCCTCgtacgcccct ... gtgttatcagGTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGT
EST: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTCCTC GTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGTEST: gi|29627307|gb|CB632318.1|CB632318
genomic: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTCCTCgtacgcccct ... gtgttatcagGTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGT
EST: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTCCTC GTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGTEST: gi|29676693|gb|CB672968.1|CB672968
genomic: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTCCTCgtacgcccct ... gtgttatcagGTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGT
EST: AGGACGACGAGGCGCCCCAGATCCCCGGCTGCTCCAACGACTTCGTCCTC GTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGTEST: gi|29677466|gb|CB673741.1|CB673741
genomic: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTCCTCgtacgcccct ... gtgttatcagGTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGT
EST: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTCCTC GTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGTEST: gi|29613254|gb|CB618267.1|CB618267
genomic: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTCCTCgtacgcccct ... gtgttatcagGTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGT
EST: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTCCTC GTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGTEST: gi|29623066|gb|CB628077.1|CB628077
genomic: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTCCTCgtacgcccct ... gtgttatcagGTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGT
EST: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTCCTC GTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGT
genomic: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTCCTCgtacgcccct ... gtgttatcagGTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGT
acccatcatgtgaccattcttttaactatgttgttttccatcaccgtgttatcagGTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGTGTTGGTGCTCGTTTTGGCCCCACTATAGAGTCAAAGGAAAAGCATGCCA
ttttaac putative branch site (score: 29)
attcttttaactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacctaacaccttacagtgctactttattgataacaagtattcctacccatcatgtgaccattcttttaactatgttgttttccatcaccgtgttatcagGTAAAAGTGCAAACCTGGGTCAATAACAGAGAGGATGGTGAGTTTGTTGGTGTTGGTGCTCGTTTTGGCCCCACTATAGAGTCAAAGGAAAAGCATGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - -tgctact
- - - - - - - - - - - - - - -gataacaa
- - - - - - - - - - - - - - - - - - - - - - - - - -catgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgttgt