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gtgagatgataaggctttagacctatagtactacgttgtaatgaataatatcttactgagttatattaccataaaaacaaagtgaaatagtatggtaactcaattatttatttctattcagCAAAGATGGGGTCTCAAGTGCTTGTACCATTCAGAGGTTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGTGACCTGGGTCAG
species | Oryza sativa |
transcript | LOC_Os02g57180.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGTTTGGAGCTACTGGATTTCTTGGCCGCTACCTTGTCCAACAACTTG CAAAGATGGGGTCTCAAGTGCTTGTACCATTCAGAGGTTCTGAGGATTGTCEST: gi|58597371|gb|CK007899.1|CK007899
genomic: GTGTTTGGAGCTACTGGATTTCTTGGCCGCTACCTTGTCCAACAACTTGgtgagatgat ... ttctattcagCAAAGATGGGGTCTCAAGTGCTTGTACCATTCAGAGGTTCTGAGGATTGTC
EST: GGTGTTTGGAGCTACTGGATTTCTTGGCCGCTACCTTGTCCAACAACTTG CAAAGATGGGGTCTCAAGTGCTTGTACCATTCAGAGGTTCTGAGGATTGTCEST: gi|29639479|gb|CB644488.1|CB644488
genomic: GGTGTTTGGAGCTACTGGATTTCTTGGCCGCTACCTTGTCCAACAACTTGgtgagatgat ... ttctattcagCAAAGATGGGGTCTCAAGTGCTTGTACCATTCAGAGGTTCTGAGGATTGTC
EST: GGTGTTTGGAGCTACTGGATTTCTTGGCCGCTACCTTGTCCAACAACTTG CAAAGATGGGGTCTCAAGTGCTTGTACCATTCAGAGGTTCTGAGGATTGTC
genomic: GGTGTTTGGAGCTACTGGATTTCTTGGCCGCTACCTTGTCCAACAACTTGgtgagatgat ... ttctattcagCAAAGATGGGGTCTCAAGTGCTTGTACCATTCAGAGGTTCTGAGGATTGTC
taccataaaaacaaagtgaaatagtatggtaactcaattatttatttctattcagCAAAGATGGGGTCTCAAGTGCTTGTACCATTCAGAGGTTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGTGACCTGGGTCAG
tggtaac putative branch site (score: 2)
tttatttct putative PPT
taactcaattatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatgataaggctttagacctatagtactacgttgtaatgaataatatcttactgagttatattaccataaaaacaaagtgaaatagtatggtaactcaattatttatttctattcagCAAAGATGGGGTCTCAAGTGCTTGTACCATTCAGAGGTTCTGAGGATTGTCACCGACACCTGAAGTTGATGGGTGACCTGGGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG