1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaccctcaaaccctacctccggtgggcacctccgccccctccctcccctcgcgcgcgcgcgcttgagttcatcccgctgcctcgcagGTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGGCTGGAATCGGCGGGGGTAGAGGAGTGCTTCGTCTTCTGCTGCGCGCACG
species | Oryza sativa |
transcript | LOC_Os02g56740.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAG GTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGGEST: gi|29661737|gb|CB658012.1|CB658012
genomic: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAGgtaccctcaa ... tgcctcgcagGTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGG
EST: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAG GTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGGEST: gi|13806247|gb|AU181440.1|AU181440
genomic: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAGgtaccctcaa ... tgcctcgcagGTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGG
EST: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAG GTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGGEST: gi|88573696|gb|CI665465.1|CI665465
genomic: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAGgtaccctcaa ... tgcctcgcagGTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGG
EST: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAG GTGCTGCTGCCGCTGGTAAATGTCCCGATGATCGAGTACACGCTCTCGTGGEST: gi|88306326|gb|CI638109.1|CI638109
genomic: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAGgtaccctcaa ... tgcctcgcagGTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGG
EST: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAG GTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGGEST: gi|29661669|gb|CB657944.1|CB657944
genomic: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAGgtaccctcaa ... tgcctcgcagGTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGG
EST: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAG GTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGGEST: gi|88352556|gb|CI654381.1|CI654381
genomic: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAGgtaccctcaa ... tgcctcgcagGTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGG
EST: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAG GTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGGEST: gi|88397543|gb|CI684469.1|CI684469
genomic: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAGgtaccctcaa ... tgcctcgcagGTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGG
EST: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAG GTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGGEST: gi|5002948|gb|AU068057.1|AU068057
genomic: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAGgtaccctcaa ... tgcctcgcagGTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGG
EST: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAG GTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGGEST: gi|29629163|gb|CB634174.1|CB634174
genomic: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAGgtaccctcaa ... tgcctcgcagGTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGG
EST: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAG GTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGGEST: gi|88385808|gb|CI568476.1|CI568476
genomic: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAGgtaccctcaa ... tgcctcgcagGTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGG
EST: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAG GTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGGEST: gi|88342614|gb|CI656319.1|CI656319
genomic: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAGgtaccctcaa ... tgcctcgcagGTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGG
EST: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAG GTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGGEST: gi|29633439|gb|CB638448.1|CB638448
genomic: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAGgtaccctcaa ... tgcctcgcagGTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGG
EST: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAG GTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGGEST: gi|88367910|gb|CI572631.1|CI572631
genomic: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAGgtaccctcaa ... tgcctcgcagGTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGG
EST: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAG GTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGGEST: gi|88729451|gb|CI752961.1|CI752961
genomic: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAGgtaccctcaa ... tgcctcgcagGTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGG
EST: CGACAGCTTCACGCCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAG GTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGGEST: gi|88358355|gb|CI606864.1|CI606864
genomic: CGACAGCTTCACG-CTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAGgtaccctcaa ... tgcctcgcagGTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGG
EST: CCGACAGTTTAACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAG GTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGG
genomic: CCGACAGCTTCACGCTCAAGTTCCGCCCCATCACCCTCGAGCGCCCCAAGgtaccctcaa ... tgcctcgcagGTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGG
cgccccctccctcccctcgcgcgcgcgcgcttgagttcatcccgctgcctcgcagGTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGGCTGGAATCGGCGGGGGTAGAGGAGTGCTTCGTCTTCTGCTGCGCGCACG
tcccgct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccctcaaaccctacctccggtgggcacctccgccccctccctcccctcgcgcgcgcgcgcttgagttcatcccgctgcctcgcagGTGCTGCTGCCGCTGGTGAATGTCCCGATGATCGAGTACACGCTCTCGTGGCTGGAATCGGCGGGGGTAGAGGAGTGCTTCGTCTTCTGCTGCGCGCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC