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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggccctccgcgactgatccgtacgctacacgcggtcgtctggggcgatccgatggttattgactggatgtggcgctgattcatttacactgtgaagCTCGCCGCGAGGATCGCGATCTCGAACCTGCACAAGACCACCATGAAGTCTTTCTCAGAGAC

Basic information

species Oryza sativa
transcript LOC_Os02g56100.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88574902|gb|CI666671.1|CI666671
EST:     CGGCGGAGACCGCCGCCGCCATGACCGCCTCCCACCCCGACTACGCCTCG                         CTCGCCGCGAGGATCGCGATCTCGAACCTGCACAAGACCACCATGAAGTCT
genomic: CGGCGGAGACCGCCGCCGCCATGACCGCCTCCCACCCCGACTACGCCTCGgtaaggccct ... cactgtgaagCTCGCCGCGAGGATCGCGATCTCGAACCTGCACAAGACCACCATGAAGTCT
EST: gi|88576044|gb|CI670189.1|CI670189
EST:     CGGCGGAGACCGCCGCCGCCATGACCGCCTCCCACCCCGACTACGCCTCG                         CTCGCCGCGAGGATCGCGATCTCGAA
genomic: CGGCGGAGACCGCCGCCGCCATGACCGCCTCCCACCCCGACTACGCCTCGgtaaggccct ... cactgtgaagCTCGCCGCGAGGATCGCGATCTCGAA
EST: gi|88569669|gb|CI660844.1|CI660844
EST:     CGGCGGAGACCGNCGCCGCCATGACCGCCTCCCACCCCGACTACGCCTCG                         CTCGCCGGGAGG
genomic: CGGCGGAGACCGCCGCCGCCATGACCGCCTCCCACCCCGACTACGCCTCGgtaaggccct ... cactgtgaagCTCGCCGCGAGG
EST: gi|88569446|gb|CI660621.1|CI660621
EST:     CGGCGGAGACCGCCGCCGCCATGACCGCCTCCCACCCCGACTACGCCTCG                         CTCGCCGCGAGGATCGCGATCTCGA
genomic: CGGCGGAGACCGCCGCCGCCATGACCGCCTCCCACCCCGACTACGCCTCGgtaaggccct ... cactgtgaagCTCGCCGCGAGGATCGCGATCTCGA
EST: gi|88330096|gb|CI652489.1|CI652489
EST:     CGGCGGAGACCGCCGNCGCCATGACCGCCTCCCACCCCGACTACGCCTCG                         CTCGCCGCGAGGATCGCGATCTCGAACCTGCA
genomic: CGGCGGAGACCGCCGCCGCCATGACCGCCTCCCACCCCGACTACGCCTCGgtaaggccct ... cactgtgaagCTCGCCGCGAGGATCGCGATCTCGAACCTGCA
EST: gi|88324727|gb|CI653310.1|CI653310
EST:     CGGCGGAGACCGCCGCCGCCATGACCGCCTCCCACCCCGACTACGCCTCG                         CTCGCCGCGAGGATCGCGATCTCGAACCTGCANAAGACCACCATGAAGTC
genomic: CGGCGGAGACCGCCGCCGCCATGACCGCCTCCCACCCCGACTACGCCTCGgtaaggccct ... cactgtgaagCTCGCCGCGAGGATCGCGATCTCGAACCTGCACAAGACCACCATGAAGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggcgatccgatggttattgactggatgtggcgctgattcatttacactgtgaagCTCGCCGCGAGGATCGCGATCTCGAACCTGCACAAGACCACCATGAAGTCTTTCTCAGAGAC
                                    attcattta  TA-rich tract