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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggatgacactgtttttgtagtagtgttgaattcttggtctacttttgctatttatgaaagaaatgcgctaattttgtgaattttgtctatcctttgcagGACAGTGGTGGTGAACAGCGTGGCATTCATGACAATAGAGATAGGCAATGGCTGAG

Basic information

species Oryza sativa
transcript LOC_Os02g55770.7
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9886093|gb|AU056029.2|AU056029
EST:     GATGCGATATCAGGATTGTGAATCAGGTCAAAAGCACTGCACCTGCGATG                         GACAGTGGTGGTGAACAGCGTGGCATTCATGACAATAGAGATAGGCAATGG
genomic: GATGCGATATCAGGATTGTGAATCAGGTCAAAAGCACTGCACCTGCGATGgtaggatttg ... tcctttgcagGACAGTGGTGGTGAACAGCGTGGCATTCATGACAATAGAGATAGGCAATGG
EST: gi|325493168|gb|JG457692.1|JG457692
EST:     TCAGGTCAAAAGCACTGGACCTGCGATG                         GACAGTGGTGGTGAGCAGCGTGGCATTCATGACAATAGAGATAGGCAATGG
genomic: TCAGGTCAAAAGCACTGCACCTGCGATGgtaggatttg ... tcctttgcagGACAGTGGTGGTGAACAGCGTGGCATTCATGACAATAGAGATAGGCAATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctatttatgaaagaaatgcgctaattttgtgaattttgtctatcctttgcagGACAGTGGTGGTGAACAGCGTGGCATTCATGACAATAGAGATAGGCAATGGCTGAG
                     cgctaat  putative branch site (score: 3)
 ttttgtctatccttt  putative PPT
 taattttgtgaatttt  TA-rich tract