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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttcttcttcttcttcttcttcttcttcttcttctccccccctctcgccctcgaaaccctagctaacacgctgaatccccgccgcgcgcgcagGAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTACGGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCA

Basic information

species Oryza sativa
transcript LOC_Os02g55770.4
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88451519|gb|CI565572.1|CI565572
EST:     TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAG                         GAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
genomic: TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAGgtcttcttct ... gcgcgcgcagGAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
EST: gi|88718299|gb|CI741388.1|CI741388
EST:     TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAG                         GAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
genomic: TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAGgtcttcttct ... gcgcgcgcagGAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
EST: gi|88577142|gb|CI673698.1|CI673698
EST:     TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAG                         GAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
genomic: TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAGgtcttcttct ... gcgcgcgcagGAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
EST: gi|88355497|gb|CI679216.1|CI679216
EST:     TCAAGGGGGACCTCGCGCCGGCGCACCCGCTCCAGGCCAGCGTCCANAAG                         GAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
genomic: TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAGgtcttcttct ... gcgcgcgcagGAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
EST: gi|58596761|gb|CK007289.1|CK007289
EST:     TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAG                         GATGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
genomic: TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAGgtcttcttct ... gcgcgcgcagGAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
EST: gi|88392100|gb|CI683931.1|CI683931
EST:     TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAG                         GAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
genomic: TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAGgtcttcttct ... gcgcgcgcagGAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
EST: gi|88720299|gb|CI743598.1|CI743598
EST:     TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAG                         GAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
genomic: TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAGgtcttcttct ... gcgcgcgcagGAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
EST: gi|88580382|gb|CI697306.1|CI697306
EST:     TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAG                         GAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
genomic: TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAGgtcttcttct ... gcgcgcgcagGAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
EST: gi|88355496|gb|CI679215.1|CI679215
EST:     TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAG                         GAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
genomic: TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAGgtcttcttct ... gcgcgcgcagGAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
EST: gi|88458095|gb|CI695047.1|CI695047
EST:     TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAG                         GAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
genomic: TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAGgtcttcttct ... gcgcgcgcagGAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
EST: gi|88301009|gb|CI592189.1|CI592189
EST:     TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAG                         GAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
genomic: TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAGgtcttcttct ... gcgcgcgcagGAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
EST: gi|88390036|gb|CI590549.1|CI590549
EST:     TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAG                         GAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
genomic: TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAGgtcttcttct ... gcgcgcgcagGAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
EST: gi|88340704|gb|CI647582.1|CI647582
EST:     TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAG                         GAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
genomic: TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAGgtcttcttct ... gcgcgcgcagGAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
EST: gi|88742052|gb|CI765560.1|CI765560
EST:     TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAG                         GAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
genomic: TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAGgtcttcttct ... gcgcgcgcagGAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
EST: gi|88386481|gb|CI575259.1|CI575259
EST:     TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAG                         GAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
genomic: TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAGgtcttcttct ... gcgcgcgcagGAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
EST: gi|88355632|gb|CI628916.1|CI628916
EST:     TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAG                         GATGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
genomic: TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAGgtcttcttct ... gcgcgcgcagGAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
EST: gi|88417142|gb|CI576216.1|CI576216
EST:     TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAG                         GAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
genomic: TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAGgtcttcttct ... gcgcgcgcagGAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
EST: gi|88364543|gb|CI644621.1|CI644621
EST:     TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAG                         GAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
genomic: TCAAGGGGGACCTCGCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAGgtcttcttct ... gcgcgcgcagGAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
EST: gi|88433839|gb|CI584334.1|CI584334
EST:     CAAGGGGGACCTCGCCGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAG                         GAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC
genomic: CAAGGGGGACCTCG-CGCCGCCGCACCCGCTCCAGGCCAGCGTCCACAAGgtcttcttct ... gcgcgcgcagGAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccctctcgccctcgaaaccctagctaacacgctgaatccccgccgcgcgcgcagGAGGCCAAGTTCTGGGCGGACAAGAAGAGGTTCGGCGCGGAAGCCATCTACGGATCCGCCTTCAACATCCGCAAGGATCTTGATGCCCAAATCCTCTCCA
                      agctaac  putative branch site (score: 2)