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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgccccccctccctcccagatctggtgcctcgtcggatggtcgaattcgctctgaccaatccagtgtgtttttgtttgatggttgcagCGAGAGCCTGGTGCACAACCGCGACCATGTCACCGTCGCCATCGAGGACCTCGACGCCTTCGACGCCGAGCTGTCCGACAAGATCCGGAAGTCTCCCGCT

Basic information

species Oryza sativa
transcript LOC_Os02g55410.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g55410.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G450055_T01 (Zea mays), 3'ss of exon 1
gtgcgccccccctccctcc---cagatctggtgcctcgtcggatggtcgaattcgctctgaccaatccagtgtgtttttgtttgatggttgcagCGAGAGCCTGGTGCACAACCGCGACCATGTCACCGTCGCCATCGAGGACCTCGACGCCTTCGACGCCGAGCTGTCCGACAAGATCCGGAAGTCTCCCGCT
|| || | ||| || |||     |||| ||  || ||  | |     ||||   |  |||| |             | ||||  || | | |||||||||||| || ||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||| || ||||||||||| ||||| || || 
gtacgactcccatcactctgcttagatatgacgcgtccaccg-----cgaaacagagctgatc-----------cctgtgttcaattggttcagCGAGAGCCTAGTACACAACCGCGACCATGTCACCGTCGCCACTGAGGACCTCGACGCCTTCGATGCCGAGCTCTCTGACAAGATCCGCAAGTCGCCTGCC

upper sequence: LOC_Os02g55410.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G075978_T01 (Zea mays), 3'ss of exon 1
gtgcgccccccctccctcccagatctggtgcctcgtcggatggt-----cgaattcgctctgaccaatccagtgtgtttttgtttgatggttgcagCGAGAGCCTGGTGCACAACCGCGACCATGTCACCGTCGCCATCGAGGACCTCGACGCCTTCGACGCCGAGCTGTCCGACAAGATCCGGAAGTCTCCCGCT
|| ||| | || || ||| |  |     | || |   |  | ||     ||  | | ||  ||   | |   |     | ||||   | | | ||| |||||||| || |||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| || ||||||||||| ||||| || || 
gtacgctctccgtcgctctcccactccttcccgctctgcttagttttgacgcgtacactgcgaaagagctgatt--cctgtgttcatttggttcagTGAGAGCCTAGTACACAACCGCGACCATGTCACCGTCGCTATTGAGGACCTCGACGCCTTCGATGCCGAGCTCTCTGACAAGATCCGCAAGTCGCCGGCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggatggtcgaattcgctctgaccaatccagtgtgtttttgtttgatggttgcagCGAGAGCCTGGTGCACAACCGCGACCATGTCACCGTCGCCATCGAGGACCTCGACGCCTTCGACGCCGAGCTGTCCGACAAGATCCGGAAGTCTCCCGCT
                                   tttttgttt  TA-rich tract