1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attcccaacattatttttcttattttcactgttttggatggacatacgaaaatattcatgatgtagagttcaaacatttatgtgaggctgtaattcacagGTTCTATGATGAGAAGGCAAAACCAACTATACCAACTCACCAGAAACAGGCAGGGTTCGCTGCTAGTAAACTTGGTGTGGCAAGCTCAGGAAAGAACAAA
species | Oryza sativa |
transcript | LOC_Os02g54760.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGGGGAAGGTGGACGATGAGATGGCGCTCAAGAGGCAGAGAACCGTGAG GTTCTATGATGAGAAGGCAAAACCAACTATACCAACTCACCAGAAACAGGCEST: gi|88826547|gb|CI777112.1|CI777112
genomic: GCGGGGAAGGTGGACGATGAGATGGCGCTCAAGAGGCAGAGAACCGTGAGgtgagcctgc ... taattcacagGTTCTATGATGAGAAGGCAAAACCAACTATACCAACTCACCAGAAACAGGC
EST: GCGGGGAAGGTGGACGATGAGATGGCGCTCAAGAGGCAGAGAACCGTGAG GTTCTATGATGAGAAGGCAAAACCAACTATACCAACTCACCAGAAACAGGCEST: gi|88356791|gb|CI619277.1|CI619277
genomic: GCGGGGAAGGTGGACGATGAGATGGCGCTCAAGAGGCAGAGAACCGTGAGgtgagcctgc ... taattcacagGTTCTATGATGAGAAGGCAAAACCAACTATACCAACTCACCAGAAACAGGC
EST: GCGGGGAAGGTGGACGATGAGATGGCGCTCAAGAGGAAGAGAACCGTGAG GTTCTATGATGAGAAGGCAAAACCAACTATACCAACTCACCAGAAAAAGGCEST: gi|88377529|gb|CI603014.1|CI603014
genomic: GCGGGGAAGGTGGACGATGAGATGGCGCTCAAGAGGCAGAGAACCGTGAGgtgagcctgc ... taattcacagGTTCTATGATGAGAAGGCAAAACCAACTATACCAACTCACCAGAAACAGGC
EST: GCGGGGAAGGTGGACGATGAGATGGCGCTCAAGAGGCAGAGAACCGTGAT GTTCTATGATGAGAAGGCAAAACCAACTATACCAACTCACCAGAAACAGGCEST: gi|88358281|gb|CI606790.1|CI606790
genomic: GCGGGGAAGGTGGACGATGAGATGGCGCTCAAGAGGCAGAGAACCGTGAGgtgagcctgc ... taattcacagGTTCTATGATGAGAAGGCAAAACCAACTATACCAACTCACCAGAAACAGGC
EST: GCGGGGAAGGTGGACGATGAGATGGCGCTCAAGAGGCAGAGAACCGTGAG GTTCTATGATGAGAAGGCAAAACCAACTATACCAACTCACCAGAAACAGGCEST: gi|88423714|gb|CI617066.1|CI617066
genomic: GCGGGGAAGGTGGACGATGAGATGGCGCTCAAGAGGCAGAGAACCGTGAGgtgagcctgc ... taattcacagGTTCTATGATGAGAAGGCAAAACCAACTATACCAACTCACCAGAAACAGGC
EST: GCGGGGAAGGTGGACGATGAGATGGCGCTCAAGAGGCAGAGAACCGTGAG GTTCTATGATGAGAAGGCAAAACCAACTATACCAACTCACCAGAAACAGGCEST: gi|86831918|gb|CI303358.1|CI303358
genomic: GCGGGGAAGGTGGACGATGAGATGGCGCTCAAGAGGCAGAGAACCGTGAGgtgagcctgc ... taattcacagGTTCTATGATGAGAAGGCAAAACCAACTATACCAACTCACCAGAAACAGGC
EST: GCGGGGAAGGTGGACGATGAGATGGCGCTCAAGAGGCAGAGAACCGTGAG GTTCTATGATGAGAAGGCAAAACCAACTATACCAACTCACCAGAAACAGGCEST: gi|88729834|gb|CI753055.1|CI753055
genomic: GCGGGGAAGGTGGACGATGAGATGGCGCTCAAGAGGCAGAGAACCGTGAGgtgagcctgc ... taattcacagGTTCTATGATGAGAAGGCAAAACCAACTATACCAACTCACCAGAAACAGGC
EST: GCGGGGAAGGTGGACGATGAGATGGCGCTCAAGAGGCAGAGAACCGTGAG GTTCTATGATGAGAAGGCAAAACCAACTATACCAACTCACCAGAAACAGGCEST: gi|8404405|gb|AU091759.1|AU091759
genomic: GCGGGGAAGGTGGACGATGAGATGGCGCTCAAGAGGCAGAGAACCGTGAGgtgagcctgc ... taattcacagGTTCTATGATGAGAAGGCAAAACCAACTATACCAACTCACCAGAAACAGGC
EST: GCGGGGAAGGTGGACGATGAGATGGCGCTCAAGAGGCAGAGAACCGTGAG G-TNTATGATGAGAAGGCAAAACCAACTATACCAACTCACCAGAAACAGGC
genomic: GCGGGGAAGGTGGACGATGAGATGGCGCTCAAGAGGCAGAGAACCGTGAGgtgagcctgc ... taattcacagGTTCTATGATGAGAAGGCAAAACCAACTATACCAACTCACCAGAAACAGGC
acgaaaatattcatgatgtagagttcaaacatttatgtgaggctgtaattcacagGTTCTATGATGAGAAGGCAAAACCAACTATACCAACTCACCAGAAACAGGCAGGGTTCGCTGCTAGTAAACTTGGTGTGGCAAGCTCAGGAAAGAACAAA
aaacatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcccaacattatttttcttattttcactgttttggatggacatacgaaaatattcatgatgtagagttcaaacatttatgtgaggctgtaattcacagGTTCTATGATGAGAAGGCAAAACCAACTATACCAACTCACCAGAAACAGGCAGGGTTCGCTGCTAGTAAACTTGGTGTGGCAAGCTCAGGAAAGAACAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - ttcactg
- - - - - - - - - - - - - - - - - tggatgg
- - - - - - - - - - - - - - - - - - - - - - -acgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - catgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaggctg