1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...cgattagctgcggatttagcatattgtttgtatcgtgatcgttgtgacactataatggctatgacatgctcttcttcttctgatgatttcaatggttcagCTGAAAAATGAAGAGACAACTTCCCATAAAAGGTGCATCGGGGGCCTCGGGATCTGGGCATGGAAAGAAAGCTCCTCAGGAGCTGGAGAACGTCTTGAAG
species | Oryza sativa |
transcript | LOC_Os02g54020.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCACCGCAGCGGCGCCATCGCCGTCGCCGTCGCCGCTGACCTAACGTAG CTGAAAAATGAAGAGACAACTTCCCATAAAAGGTGCATCGGGGGCCTCGGGEST: gi|88730102|gb|CI753717.1|CI753717
genomic: GCCACCGCAGCGGCGCCATCGCCGTCGCCGTCGCCGCTGACCTAACGTAGgtacgcctcg ... aatggttcagCTGAAAAATGAAGAGACAACTTCCCATAAAAGGTGCATCGGGGGCCTCGGG
EST: GCCACCGCAGCGGCGCCATCGCCGTCGCCGTCGCCGCTGACCTAACGTAG CTGAAAAATGAAGAGACAACTTCCCATAAAAGGTGCATCGGGGGCCTCGGGEST: gi|88693095|gb|CI736670.1|CI736670
genomic: GCCACCGCAGCGGCGCCATCGCCGTCGCCGTCGCCGCTGACCTAACGTAGgtacgcctcg ... aatggttcagCTGAAAAATGAAGAGACAACTTCCCATAAAAGGTGCATCGGGGGCCTCGGG
EST: GCCACCGCAGCGGCGCCATCGCCGTCGCCGTCGCCGCTGACCTAACGTAG CTGAAAAATGAAGAGACAACTTCCCATAAAAGGTGCATCGGGGGCCTCGGGEST: gi|88729634|gb|CI751437.1|CI751437
genomic: GCCACCGCAGCGGCGCCATCGCCGTCGCCGTCGCCGCTGACCTAACGTAGgtacgcctcg ... aatggttcagCTGAAAAATGAAGAGACAACTTCCCATAAAAGGTGCATCGGGGGCCTCGGG
EST: GCCACCGCAGCGGCGCCATCGCCGTCGCCGTCGCCGCTGACCTAACGTAG CTGAAAAATGAAGAGACAACTTCCCATAAAAGGTGCATCGGGGGCCTCGGGEST: gi|88369281|gb|CI577744.1|CI577744
genomic: GCCACCGCAGCGGCGCCATCGCCGTCGCCGTCGCCGCTGACCTAACGTAGgtacgcctcg ... aatggttcagCTGAAAAATGAAGAGACAACTTCCCATAAAAGGTGCATCGGGGGCCTCGGG
EST: GCCACCGCAGCGGCGCCATCGCCGTCGCCGTCGCCGCTGACCTAACGTAG CTGAAAAATGAAGAGACAACTTCCCATAAAAGGTGCATCGGGGGCCTCGGG
genomic: GCCACCGCAGCGGCGCCATCGCCGTCGCCGTCGCCGCTGACCTAACGTAGgtacgcctcg ... aatggttcagCTGAAAAATGAAGAGACAACTTCCCATAAAAGGTGCATCGGGGGCCTCGGG
gacactataatggctatgacatgctcttcttcttctgatgatttcaatggttcagCTGAAAAATGAAGAGACAACTTCCCATAAAAGGTGCATCGGGGGCCTCGGGATCTGGGCATGGAAAGAAAGCTCCTCAGGAGCTGGAGAACGTCTTGAAG
ttctgat putative branch site (score: 8)
atttcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgattagctgcggatttagcatattgtttgtatcgtgatcgttgtgacactataatggctatgacatgctcttcttcttctgatgatttcaatggttcagCTGAAAAATGAAGAGACAACTTCCCATAAAAGGTGCATCGGGGGCCTCGGGATCTGGGCATGGAAAGAAAGCTCCTCAGGAGCTGGAGAACGTCTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - gctgcgg
- - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgatt