1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacgtacagagtaattccgtggtactctttgacgataattagtcgagttcgtagctaattaattgcgtggttttgtcacgcacagGCGGAGGTGGTGTACCTGGGGATGTTGAGCCATCCGCATCTGGTGAAGCTCATCGGCTACTGCTGCCAAGACGACCACCGGATGCTCGTCTACGAGTACA
species | Oryza sativa |
transcript | LOC_Os02g53750.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGTCAAGTACCTCGACGGCGAAGGCGACCAGGGCCACCGCGAATGGCTG GCGGAGGTGGTGTACCTGGGGATGTTGAGCCATCCGCATCTGGTGAAGCTCEST: gi|29682291|gb|CB678566.1|CB678566
genomic: CCGTCAAGTACCTCGACGGCGAAGGCGACCAGGGCCACCGCGAATGGCTGgtacgtacag ... tcacgcacagGCGGAGGTGGTGTACCTGGGGATGTTGAGCCATCCGCATCTGGTGAAGCTC
EST: CCGTCAAGTACCTCGACGGCGAAGGCGACCAGGGCCACCGCGAATGGCTG GCGGAGGTGGTGTACCTGGGGATGTTGAGCCATCCGCATCTGGTGAAGCTCEST: gi|29667961|gb|CB664236.1|CB664236
genomic: CCGTCAAGTACCTCGACGGCGAAGGCGACCAGGGCCACCGCGAATGGCTGgtacgtacag ... tcacgcacagGCGGAGGTGGTGTACCTGGGGATGTTGAGCCATCCGCATCTGGTGAAGCTC
EST: CCGTCAAGTACCTCGACGGCGAAGGCGACCAGGGCCACCGCGAATGGCTG GCGGAGGTGGTGTACCTGGGGATGTTGAGCCATCCGCATCTGGTGAAGCTCEST: gi|29673917|gb|CB670192.1|CB670192
genomic: CCGTCAAGTACCTCGACGGCGAAGGCGACCAGGGCCACCGCGAATGGCTGgtacgtacag ... tcacgcacagGCGGAGGTGGTGTACCTGGGGATGTTGAGCCATCCGCATCTGGTGAAGCTC
EST: CCGTCAAGTACCTCGACGGCGAAGGCGACCAGGGCCACCGCGAATGGCTG GCGGAGGTGGTGTACCTGGGGATGTTGAGCCATCCGCATCTGGTGAAGCTC
genomic: CCGTCAAGTACCTCGACGGCGAAGGCGACCAGGGCCACCGCGAATGGCTGgtacgtacag ... tcacgcacagGCGGAGGTGGTGTACCTGGGGATGTTGAGCCATCCGCATCTGGTGAAGCTC
gacgataattagtcgagttcgtagctaattaattgcgtggttttgtcacgcacagGCGGAGGTGGTGTACCTGGGGATGTTGAGCCATCCGCATCTGGTGAAGCTCATCGGCTACTGCTGCCAAGACGACCACCGGATGCTCGTCTACGAGTACA
aattaat putative branch site (score: 11)
ttttgtc putative PPT
taattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtacagagtaattccgtggtactctttgacgataattagtcgagttcgtagctaattaattgcgtggttttgtcacgcacagGCGGAGGTGGTGTACCTGGGGATGTTGAGCCATCCGCATCTGGTGAAGCTCATCGGCTACTGCTGCCAAGACGACCACCGGATGCTCGTCTACGAGTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC