1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttcttcgagaagcttagcaatttgcttttacatgatttgttgaatgaattactatctacttgtgctgttatagttctgcaaatgcttatgcttggtgcagGTTACATCACCATATGGGAACACCTTACATCACAATGAAAATGCTACGGTTGGTCAGTTCGCATTCACAACTTCAGAAGCAGGAAACTATCTTGCATGCT
species | Oryza sativa |
transcript | LOC_Os02g52920.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCTCATGTACGAGTCCCACCCCTCCTCCCACCCCACCATCGCCGTCAAG GTTACATCACCATATGGGAACACCTTACATCACAATGAAAATGCTACGGTTEST: gi|11026623|gb|AU163224.1|AU163224
genomic: CCCTCATGTACGAGTCCCACCCCTCCTCCCACCCCACCATCGCCGTCAAGgtaattcccc ... cttggtgcagGTTACATCACCATATGGGAACACCTTACATCACAATGAAAATGCTACGGTT
EST: CCCTCATGTACGAGTCCCACCCCTCCTCCCACCCCACCATCGCCGTCAAG GTTACATCACCATATGGGAACACCTTACATCACAATGAAAATGCTACGGTTEST: gi|88692465|gb|CI736040.1|CI736040
genomic: CCCTCATGTACGAGTCCCACCCCTCCTCCCACCCCACCATCGCCGTCAAGgtaattcccc ... cttggtgcagGTTACATCACCATATGGGAACACCTTACATCACAATGAAAATGCTACGGTT
EST: CCCTCATGTACGAGTCCCACCCCTCCTCCCACCCCACCATCGCCGTCAAG GTTACATCACCATATGGGAACACCTTACATCACAATGAAAATGCTACGGTTEST: gi|88694626|gb|CI738664.1|CI738664
genomic: CCCTCATGTACGAGTCCCACCCCTCCTCCCACCCCACCATCGCCGTCAAGgtaattcccc ... cttggtgcagGTTACATCACCATATGGGAACACCTTACATCACAATGAAAATGCTACGGTT
EST: CCCTCATGTACGAGTCCCACCCCTCCTCCCACCCCACCATCGCCGTCAAG GTTACATCACCATATGGGAACACCTTACATCANAATGAAAEST: gi|218497308|gb|FG954388.1|FG954388
genomic: CCCTCATGTACGAGTCCCACCCCTCCTCCCACCCCACCATCGCCGTCAAGgtaattcccc ... cttggtgcagGTTACATCACCATATGGGAACACCTTACATCACAATGAAA
EST: CCCTCATGTACGAGTCCCACCCCTCCTCCCACCCCACCATCGCCGTTAAG GTTACATCACCATATGGGAACACCTTACATCACAATGAAAATGCTACGGTTEST: gi|88364097|gb|CI610441.1|CI610441
genomic: CCCTCATGTACGAGTCCCACCCCTCCTCCCACCCCACCATCGCCGTCAAGgtaattcccc ... cttggtgcagGTTACATCACCATATGGGAACACCTTACATCACAATGAAAATGCTACGGTT
EST: CCCTCATGTACGAGTCCCACCCCTCCTCCCACCCCACCATCGCCGTCAAG GTTACATCACCATATGGGAACACCTTACATCACAATGAAAATGCTACGGTTEST: gi|58588754|gb|CF987062.1|CF987062
genomic: CCCTCATGTACGAGTCCCACCCCTCCTCCCACCCCACCATCGCCGTCAAGgtaattcccc ... cttggtgcagGTTACATCACCATATGGGAACACCTTACATCACAATGAAAATGCTACGGTT
EST: CCCTCATGTACGAGTCCCACCCCTCCTCCCACCCCACCATCGCCGTCAAG GTTACATCACCATATGGGAACACCTTACATCACAATGAAAATGCTACGGTTEST: gi|88308639|gb|CI653526.1|CI653526
genomic: CCCTCATGTACGAGTCCCACCCCTCCTCCCACCCCACCATCGCCGTCAAGgtaattcccc ... cttggtgcagGTTACATCACCATATGGGAACACCTTACATCACAATGAAAATGCTACGGTT
EST: CCCTCATGTACGAGTCCCACCCCTCCTCCCACCCCACCATCGCCGTCAAG GTTANATCACCATATGGGAACACCTTACATAANAATGAAAATGCTACGGTTEST: gi|88312925|gb|CI590021.1|CI590021
genomic: CCCTCATGTACGAGTCCCACCCCTCCTCCCACCCCACCATCGCCGTCAAGgtaattcccc ... cttggtgcagGTTACATCACCATATGGGAACACCTTACATCACAATGAAAATGCTACGGTT
EST: CCCTCATGTACGAGTCCCACCCCTCCTCCCACCCCACCGTCGCCGTCAAG TEST: gi|88312925|gb|CI590021.1|CI590021
genomic: CCCTCATGTACGAGTCCCACCCCTCCTCCCACCCCACCATCGCCGTCAAGgtaattcccc ... cttggtgcag-
EST: CCCTCATGTACGAGTCCCACCCCTCCTCCCACCCCACCGTCGCCGTCAAG TEST: gi|88324565|gb|CI568184.1|CI568184
genomic: CCCTCATGTACGAGTCCCACCCCTCCTCCCACCCCACCATCGCCGTCAAGgtaattcccc ... cttggtgcag-
EST: CCCTCATGTACGAGTACCACCCCTCCTCC-ACCCCAC-ATCGCCGTCAAG GTTACATCACCATATGGGAACACCTTACATCACAATGAAAATGCTAGGGTT
genomic: CCCTCATGTACGAGTCCCACCCCTCCTCCCACCCCACCATCGCCGTCAAGgtaattcccc ... cttggtgcagGTTACATCACCATATGGGAACACCTTACATCACAATGAAAATGCTACGGTT
gaattactatctacttgtgctgttatagttctgcaaatgcttatgcttggtgcagGTTACATCACCATATGGGAACACCTTACATCACAATGAAAATGCTACGGTTGGTCAGTTCGCATTCACAACTTCAGAAGCAGGAAACTATCTTGCATGCT
ttatagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttcgagaagcttagcaatttgcttttacatgatttgttgaatgaattactatctacttgtgctgttatagttctgcaaatgcttatgcttggtgcagGTTACATCACCATATGGGAACACCTTACATCACAATGAAAATGCTACGGTTGGTCAGTTCGCATTCACAACTTCAGAAGCAGGAAACTATCTTGCATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - tgctttt
- - - - - - - - - - - - - - -acatgat
- - - - - - - - - - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgctt