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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcagtaagcacagcaccgaaatgcccgcgaacacgaacgatctcggtcacgcttgcactcgtcgtcaccgcaaatcgtcgcgtttcctaacgctaatgcccttgtgatcagcgcagGTGAAAGTACTCGCGCTAACTGACCACGACACCATGGCCGGCGTCCCCGAGGCCATCGAATCTGCGAAGCAGTGCTCCATCAGGATCATACCCGGTGTCG

Basic information

species Oryza sativa
transcript LOC_Os02g51660.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g51660.1 (Oryza sativa), 3'ss of exon 1
lower sequence: EFJ11708 (Selaginella moellendorffii), 3'ss of exon 1
gtaagcagtaagcacagcaccgaaatgcccgcgaacacgaacgatctcggtcacgcttgcactcgtcgtcaccgcaaatcgtcgcgtttcctaacgctaatgcccttgtgatcagcgcagGTGAAAGTACTCGCGCTAACTGACCACGACACCATGGCCGGCGTCCCCGAGGCCATCGAATCTGCGAAGCAGTGCTCCATCAGGATCATACCCGGTGTCG
                                                                   ||   |||        |  ||||   ||    |  | |||||  ||    ||||| ||||| || ||||| || || ||||||||||||||||||||||| |  |||||||   | ||   |   |     ||  ||||||| || || || |
-------------------------------------------------------------------gtacgcgctggctcgtgtctttctcgact---acactcttgtcttc----cagGTTAAAGTTCTGGCGCTCACGGATCACGACACCATGGCCGGCGTCCCAGCCGCCATCGCCGCCGCTCGGAGCTATGGAATGCGGATCATCCCTGGAGTGG

upper sequence: LOC_Os02g51660.1 (Oryza sativa), 3'ss of exon 1
lower sequence: EFJ22486 (Selaginella moellendorffii), 3'ss of exon 1
gtaagcagtaagcacagcaccgaaatgcccgcgaacacgaacgatctcggtcacgcttgcactcgtcgtcaccgcaaatcgtcgcgtttcctaacgctaatgcccttgtgatcagcgcagGTGAAAGTACTCGCGCTAACTGACCACGACACCATGGCCGGCGTCCCCGAGGCCATCGAATCTGCGAAGCAGTGCTCCATCAGGATCATACCCGGTGTCG
                                                                   ||   |||        |  ||||   ||    |  | |||||  ||    ||||| ||||| || ||||| || || ||||||||||||||||||||||| |  |||||||   | ||   |   |     ||  ||||||| || || || |
-------------------------------------------------------------------gtacgcgctggctcgtgtctttctcgact---acactcttgtcttc----cagGTTAAAGTTCTGGCGCTCACGGATCACGACACCATGGCCGGCGTCCCGGCCGCCATCGCCGCCGCTCGGAGCTATGGAATGCGGATCATCCCTGGAGTGG