1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatcacagataaacacttgttactgatttcttacatactgttcttcgcgagttgatttttgctcgaatttttgattcattgttgttttagGGGTCACAGAAGCGGTGGAGGTTGGGAGCGAGGAGATGTTGTTTGAGCAACTTTCTTCTCTGGCCAAAGAGGTGGCGAGAGTGGAGTTGGTCAGGGATTA
species | Oryza sativa |
transcript | LOC_Os02g51330.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAATGTCCGCGGCTGCCTCGCTGCCCTGAATGCCTCCACCTCTGAACTAG GG-TCATAGAAGCGGTGGAGGTTGGGAGCGAGGAGATGTTGTTTGAGCAACEST: gi|58605796|gb|CK033829.1|CK033829
genomic: TAATGTCCGCGGCTGCCTCGCTGCCCTGAATGCCTCCACCTCTGAACCAGgtatcacaga ... gttgttttagGGGTCACAGAAGCGGTGGAGGTTGGGAGCGAGGAGATGTTGTTTGAGCAAC
EST: TAATGTCCGCGGCTGCCTCGCTGCCCTGAATGCCTCCACCTCTGAACCA- GGGTCACAGAAGCGGTGGAGGTTGGGAGCGAGGAGATGTTGTTTGAGCAACEST: gi|88314828|gb|CI608287.1|CI608287
genomic: TAATGTCCGCGGCTGCCTCGCTGCCCTGAATGCCTCCACCTCTGAACCAGgtatcacaga ... gttgttttagGGGTCACAGAAGCGGTGGAGGTTGGGAGCGAGGAGATGTTGTTTGAGCAAC
EST: TAATGTCCGCGGCTGCCTCGCTGCC-TGAATGCCTCCACCTCTGAACCAG GGGTCACAGAAGCGGTGGAGGTTGGGAGCGAGGAGATGTTGTTTGEST: gi|88408585|gb|CI686087.1|CI686087
genomic: TAATGTCCGCGGCTGCCTCGCTGCCCTGAATGCCTCCACCTCTGAACCAGgtatcacaga ... gttgttttagGGGTCACAGAAGCGGTGGAGGTTGGGAGCGAGGAGATGTTGTTTG
EST: AATGTCCGCGGCTGCCTCGCTGCCCTGAATGCCTCCNAC-TCTGAACCAG GGGTCACAGAAGCGGTGGAGGTTGGGAGCGAGGAGATGTTGTTTGAGCAACEST: gi|88407783|gb|CI607917.1|CI607917
genomic: AATGTCCGCGGCTGCCTCGCTGCCCTGAATGCCTCC-ACCTCTGAACCAGgtatcacaga ... gttgttttagGGGTCACAGAAGCGGTGGAGGTTGGGAGCGAGGAGATGTTGTTTGAGCAAC
EST: TAATGTCCGCGGCTGCCTCGCTGCCCTGAATGCCTCCACCTCTGAACCAG GGGTTACAGAAGCGGTGGAGGTTGGGAGCGAGGAGEST: gi|88414365|gb|CI691525.1|CI691525
genomic: TAATGTCCGCGGCTGCCTCGCTGCCCTGAATGCCTCCACCTCTGAACCAGgtatcacaga ... gttgttttagGGGTCACAGAAGCGGTGGAGGTTGGGAGCGAGGAG
EST: TAATGTCCGCGGCTGCCTCGCTGCCCTGAATGCCTCCACCTCTGAACCAG GGGTCACAGAAGCGGTGGAGGTTGGGAGCGAGGAGATGTTGTTTGAGC
genomic: TAATGTCCGCGGCTGCCTCGCTGCCCTGAATGCCTCCACCTCTGAACCAGgtatcacaga ... gttgttttagGGGTCACAGAAGCGGTGGAGGTTGGGAGCGAGGAGATGTTGTTTGAGC
tactgttcttcgcgagttgatttttgctcgaatttttgattcattgttgttttagGGGTCACAGAAGCGGTGGAGGTTGGGAGCGAGGAGATGTTGTTTGAGCAACTTTCTTCTCTGGCCAAAGAGGTGGCGAGAGTGGAGTTGGTCAGGGATTA
ttttgat putative branch site (score: 4)
ttgtttt putative PPT
aatttttgattcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcacagataaacacttgttactgatttcttacatactgttcttcgcgagttgatttttgctcgaatttttgattcattgttgttttagGGGTCACAGAAGCGGTGGAGGTTGGGAGCGAGGAGATGTTGTTTGAGCAACTTTCTTCTCTGGCCAAAGAGGTGGCGAGAGTGGAGTTGGTCAGGGATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG