1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagttcctgtgccgcttttgggaatcatgattgcatcgtgatatctgcttgttcatttgatgtgatatgatcttgattcgatttcccttgtgcagATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACAAGCGTGGTGATTATGTGCCTGGATTGAAG
species | Oryza sativa |
transcript | LOC_Os02g50620.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATT ATGGGATGGGAACCGCTGAGTGGAGGGCAGCEST: gi|29678001|gb|CB674276.1|CB674276
genomic: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATTgtgagttcct ... ccttgtgcagATGGGATGGGAACCGCTGAGTGGAGGGCAGC
EST: GCTGCCAGCTATATTGGTCTGCGAAAACAACCATT ATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACAEST: gi|33380532|gb|CF195875.1|CF195875
genomic: GCTGCCAGCTATATTGGTCTGCGAAAACAACCATTgtgagttcct ... ccttgtgcagATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATT ATGGGATGGGAACTGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACAEST: gi|29678000|gb|CB674275.1|CB674275
genomic: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATTgtgagttcct ... ccttgtgcagATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATT ATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACAEST: gi|58695020|gb|CK083707.1|CK083707
genomic: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATTgtgagttcct ... ccttgtgcagATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATT ATGGGATGGGAAEST: gi|29686015|gb|CB682290.1|CB682290
genomic: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATTgtgagttcct ... ccttgtgcagATGGGATGGGAA
EST: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATT ATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACAEST: gi|112785647|gb|EE591127.1|EE591127
genomic: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATTgtgagttcct ... ccttgtgcagATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATT ATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACAEST: gi|29615722|gb|CB620734.1|CB620734
genomic: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATTgtgagttcct ... ccttgtgcagATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATT ATGGGATGGGAACTGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACAEST: gi|117243615|gb|CT843149.1|CT843149
genomic: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATTgtgagttcct ... ccttgtgcagATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATT ATGGGATGGGAACTGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACAEST: gi|29615723|gb|CB620735.1|CB620735
genomic: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATTgtgagttcct ... ccttgtgcagATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: AGCTATATTGGTCTGCGAAAACAACCATT ATGGGATGGGAACTGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACAEST: gi|29637300|gb|CB642309.1|CB642309
genomic: AGCTATATTGGTCTGCGAAAACAACCATTgtgagttcct ... ccttgtgcagATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: GGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATT ATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACAEST: gi|29637299|gb|CB642308.1|CB642308
genomic: GGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATTgtgagttcct ... ccttgtgcagATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGANAACAACCATT ATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACAEST: gi|58678901|gb|CK067588.1|CK067588
genomic: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATTgtgagttcct ... ccttgtgcagATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATT ATGGGATGGGAACTGCTGAGTGGAGGGCAGCAAAGAGCCCTGGCTACTACAEST: gi|33800928|gb|CF326337.1|CF326337
genomic: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATTgtgagttcct ... ccttgtgcagATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATT ATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACAEST: gi|29639553|gb|CB644562.1|CB644562
genomic: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATTgtgagttcct ... ccttgtgcagATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATT ATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACAEST: gi|66915210|gb|CX102058.1|CX102058
genomic: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATTgtgagttcct ... ccttgtgcagATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATT ATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACAEST: gi|396941607|gb|HO188264.1|HO188264
genomic: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATTgtgagttcct ... ccttgtgcagATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATT ATGGGATGGGAACTGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: ATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATTgtgagttcct ... ccttgtgcagATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
atatctgcttgttcatttgatgtgatatgatcttgattcgatttcccttgtgcagATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACAAGCGTGGTGATTATGTGCCTGGATTGAAG
tcttgat putative branch site (score: 176)
tttcccttgt putative PPT
ttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttcctgtgccgcttttgggaatcatgattgcatcgtgatatctgcttgttcatttgatgtgatatgatcttgattcgatttcccttgtgcagATGGGATGGGAACCGCTGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACAAGCGTGGTGATTATGTGCCTGGATTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG