1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttcctgaatgtgatcagttcaacaataatcaaaatcaaatagcattgtttctttttaaaaaagtttaaccaaatttgacgcattcacgcatgcacgcagATGTCGGAGCTGTTCAACCAGAGGAGTTCGGTGGAAGGGAAGATCCCGTCGGGGCAGTTCAACGCGTCATTCGACCTGGACAGCGGGTCGTGGGCCCACG
species | Oryza sativa |
transcript | LOC_Os02g50340.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAAGGGCGACCGCGTCCGGTTCAAGTCCGACGTGCTCGAGTTCAACAAG ATGTCGGAGCTGTTCAACCAGAGGAGTTCGGTGGAAGGGAAGATCCCGTCGEST: gi|88361150|gb|CI646174.1|CI646174
genomic: ACAAGGGCGACCGCGTCCGGTTCAAGTCCGACGTGCTCGAGTTCAACAAGgttagcacct ... atgcacgcagATGTCGGAGCTGTTCAACCAGAGGAGTTCGGTGGAAGGGAAGATCCCGTCG
EST: ACAAGGGCGACCGCGTCCGGTTCAAGTCCGACGTGCTCGAGTTCAACAAG ATGTCCGAGCTGTTCAACCAGAGGAGTTCGGTGGAAGG
genomic: ACAAGGGCGACCGCGTCCGGTTCAAGTCCGACGTGCTCGAGTTCAACAAGgttagcacct ... atgcacgcagATGTCGGAGCTGTTCAACCAGAGGAGTTCGGTGGAAGG
ttgtttctttttaaaaaagtttaaccaaatttgacgcattcacgcatgcacgcagATGTCGGAGCTGTTCAACCAGAGGAGTTCGGTGGAAGGGAAGATCCCGTCGGGGCAGTTCAACGCGTCATTCGACCTGGACAGCGGGTCGTGGGCCCACG
tctttttaaaaaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcctgaatgtgatcagttcaacaataatcaaaatcaaatagcattgtttctttttaaaaaagtttaaccaaatttgacgcattcacgcatgcacgcagATGTCGGAGCTGTTCAACCAGAGGAGTTCGGTGGAAGGGAAGATCCCGTCGGGGCAGTTCAACGCGTCATTCGACCTGGACAGCGGGTCGTGGGCCCACG
- - ctgaatg
- - - - - - - - - - caacaat
- - - - - - - - - - - - - - - - aaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcattca