1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtgaccacgcctgcagcctccccgggttcgttggcttcttcgctcctttgctgatggatgtgtgtgtgtgtgtgtgtgtttttttggggggttttgccattgcagAGGTGGTGAGTGGGTTCCTCTCCAACGCGGCGTCGTCGGTGATGAAGCGGCTGTGGTCGCTCAAATCCACCACGAAGACAG
species | Oryza sativa |
transcript | LOC_Os02g49770.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTCCTCCTCGCCGCCGTCGCTCCGGCCTCCGCGTCGTCGTACCCCGCAA AGGTGGTGAGTGGGTTCCTCTCCAACGCGGCGTCGTCGGTGATGAAGCGGCEST: gi|88694720|gb|CI738758.1|CI738758
genomic: GCTCCTCCTCGCCGCCGTCGCTCCGGCCTCCGCGTCGTCGTACCCCGCAAgtgagtgacc ... gccattgcagAGGTGGTGAGTGGGTTCCTCTCCAACGCGGCGTCGTCGGTGATGAAGCGGC
EST: GCTCCTCCTCGCCGCCGTCGCTCCGGCCTCCGCGTCGTCGTACCCCGCAA AGGTGGTGAGTGGGTTCCTCTCCAACGCGGCGTCGTCGGTGATGAAGCGGCEST: gi|58673123|gb|CK061809.1|CK061809
genomic: GCTCCTCCTCGCCGCCGTCGCTCCGGCCTCCGCGTCGTCGTACCCCGCAAgtgagtgacc ... gccattgcagAGGTGGTGAGTGGGTTCCTCTCCAACGCGGCGTCGTCGGTGATGAAGCGGC
EST: GCTCCTCCTCGCCGCCGTCGCTCCGGCCTCCGCGTCGTCGTACCCCGCAA AGGTTGTGAGTGGGTTCCTCTCCAACGCGGCGTCGTCGGTGATGAAGCGGCEST: gi|88720088|gb|CI745178.1|CI745178
genomic: GCTCCTCCTCGCCGCCGTCGCTCCGGCCTCCGCGTCGTCGTACCCCGCAAgtgagtgacc ... gccattgcagAGGTGGTGAGTGGGTTCCTCTCCAACGCGGCGTCGTCGGTGATGAAGCGGC
EST: GCTCCTCCTCGCCGCCGTCGCTCCGGCCTCCGCGTCGTCGTACCCCGCAA AGGTGGTGAGTGGGTTCCTCTCCAACGCGGCGTCGTCGGTGATGAAGCGGCEST: gi|88350208|gb|CI623146.1|CI623146
genomic: GCTCCTCCTCGCCGCCGTCGCTCCGGCCTCCGCGTCGTCGTACCCCGCAAgtgagtgacc ... gccattgcagAGGTGGTGAGTGGGTTCCTCTCCAACGCGGCGTCGTCGGTGATGAAGCGGC
EST: GCTCCTCCTCGCCGCCGTCGCTCCGGCCTCCGCGTCGTCGTACCCCGCAA AGGTGGTGAGTGGGTTCCTCTCCAACGCGGCGTCGTCGGTGATGAAGCGGCEST: gi|88407639|gb|CI607773.1|CI607773
genomic: GCTCCTCCTCGCCGCCGTCGCTCCGGCCTCCGCGTCGTCGTACCCCGCAAgtgagtgacc ... gccattgcagAGGTGGTGAGTGGGTTCCTCTCCAACGCGGCGTCGTCGGTGATGAAGCGGC
EST: GCTCCTCCTCGCCGCCGTCGCTCCGGCCTCCGCGTCGTCGTACCCCGCAA AGGTGGTGAGTGGGTTCCTCTCCAACGCGGCGTCGTCGGTGATGAAGCGGC
genomic: GCTCCTCCTCGCCGCCGTCGCTCCGGCCTCCGCGTCGTCGTACCCCGCAAgtgagtgacc ... gccattgcagAGGTGGTGAGTGGGTTCCTCTCCAACGCGGCGTCGTCGGTGATGAAGCGGC
ctgatggatgtgtgtgtgtgtgtgtgtgtttttttggggggttttgccattgcagAGGTGGTGAGTGGGTTCCTCTCCAACGCGGCGTCGTCGGTGATGAAGCGGCTGTGGTCGCTCAAATCCACCACGAAGACAG
tgctgat putative branch site (score: 3)
ttttgcc putative PPT
tgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgaccacgcctgcagcctccccgggttcgttggcttcttcgctcctttgctgatggatgtgtgtgtgtgtgtgtgtgtttttttggggggttttgccattgcagAGGTGGTGAGTGGGTTCCTCTCCAACGCGGCGTCGTCGGTGATGAAGCGGCTGTGGTCGCTCAAATCCACCACGAAGACAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA