1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttccattaaaaaaatatactactctctttccataatgttcaattataagtttgttgttttgttgttactgatttttgtttttggctttttgcacaccagTATCCTGGTAGGATCCCACTGAATTCAACTGTTGAACAAAAAGCCAGGAAGGTGGCTGTTCTTGTGGCACTCAGTGCTAGTGGAAGTGCTCCAGTACTGT
species | Oryza sativa |
transcript | LOC_Os02g49230.6 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGCCGCCGACGACCGCAGCAGGGGTGGATCCGGGGCGGCGCCGATTCG TATCCTGGTAGGATCCCACTGAATTCAACTGTTGAACAAAAAGCCAGGAAGEST: gi|572029|gb|D41540.1|D41540
genomic: GCCGCCGCCGACGACCGCAGCAGGGGTGGATCCGGGGCGGCGCCGATTCGgtgagtccgg ... tgcacaccagTATCCTGGTAGGATCCCACTGAATTCAACTGTTGAACAAAAAGCCAGGAAG
EST: GCCGCCGCCGACGACCGCAGCAGGGGTGGNTCCGGGGCGGCGCCGATTCG TATCCTGGTAGGATCCCACTGAATTCAACTGTTGAACAAAAAGCCAGGAAGEST: gi|569790|gb|D40639.1|D40639
genomic: GCCGCCGCCGACGACCGCAGCAGGGGTGGATCCGGGGCGGCGCCGATTCGgtgagtccgg ... tgcacaccagTATCCTGGTAGGATCCCACTGAATTCAACTGTTGAACAAAAAGCCAGGAAG
EST: GCCGCCGCCGACGACCGCAGCAGGGGTGGATCCGGGGCGGCGCCGATTCG TATCCTGGTAGGNTCCCACTGAATTCAACTGTTGAACAAAAAGCCAGGAAGEST: gi|88402611|gb|CI598838.1|CI598838
genomic: GCCGCCGCCGACGACCGCAGCAGGGGTGGATCCGGGGCGGCGCCGATTCGgtgagtccgg ... tgcacaccagTATCCTGGTAGGATCCCACTGAATTCAACTGTTGAACAAAAAGCCAGGAAG
EST: GCCGCCGCCGACGACCGCAGCAGGGGTGGATCCGGGGCGGCGCCGATTCG TATCCTGGTAGGATCCCACTGAATTCAACTGTTGAACAAAAAGCCAGGAAGEST: gi|33681825|gb|CF310064.1|CF310064
genomic: GCCGCCGCCGACGACCGCAGCAGGGGTGGATCCGGGGCGGCGCCGATTCGgtgagtccgg ... tgcacaccagTATCCTGGTAGGATCCCACTGAATTCAACTGTTGAACAAAAAGCCAGGAAG
EST: GCCGCCGCCGACGACCGCAGCAGGGGTGGATCCGGGGCGGCGCCGATTCG TATCCTGGTAGGATCCCACTGAATTCAACTGTTGAACAAAAAGCCAGGAAGEST: gi|572006|gb|D41517.1|D41517
genomic: GCCGCCGCCGACGACCGCAGCAGGGGTGGATCCGGGGCGGCGCCGATTCGgtgagtccgg ... tgcacaccagTATCCTGGTAGGATCCCACTGAATTCAACTGTTGAACAAAAAGCCAGGAAG
EST: GCCGCCGCCGACGACCGCAGCAGGGGTGGATCCGGGGCGGCGC-GATTCG TATCCTGGTAGGATCCCACTGAATTCAACTGTTGAACAAAAAGCCAGGAAG
genomic: GCCGCCGCCGACGACCGCAGCAGGGGTGGATCCGGGGCGGCGCCGATTCGgtgagtccgg ... tgcacaccagTATCCTGGTAGGATCCCACTGAATTCAACTGTTGAACAAAAAGCCAGGAAG
ataagtttgttgttttgttgttactgatttttgtttttggctttttgcacaccagTATCCTGGTAGGATCCCACTGAATTCAACTGTTGAACAAAAAGCCAGGAAGGTGGCTGTTCTTGTGGCACTCAGTGCTAGTGGAAGTGCTCCAGTACTGT
tactgat putative branch site (score: 2)
ctttttgc putative PPT
tgatttttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttccattaaaaaaatatactactctctttccataatgttcaattataagtttgttgttttgttgttactgatttttgtttttggctttttgcacaccagTATCCTGGTAGGATCCCACTGAATTCAACTGTTGAACAAAAAGCCAGGAAGGTGGCTGTTCTTGTGGCACTCAGTGCTAGTGGAAGTGCTCCAGTACTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG