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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaaacttttactgaattccgcgccaaaatcctactgctactccgaccaatccatgtaccgaactgaactcgaattgttcttgccggcggcagAATCGGCGCGAGAGGATCAGCGAGCGGCTGCGGATCCTGCAGGAGCTCGTGCCCAACGGCACCAAGGTCGACCTCGTCACCATGCTCGAGAAGGCCATCA

Basic information

species Oryza sativa
transcript LOC_Os02g48060.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g48060.1 (Oryza sativa), 3'ss of exon 1
lower sequence: AC216731.3_FGT001 (Zea mays), 3'ss of exon 2
gtaattaaacttttactgaat--tccgcgccaaaatcctactgctactccgaccaatccatgtaccgaactgaactcgaattgttcttgccggcggcagAATCGGCGCGAGAGGATCAGCGAGCGGCTGCGGATCCTGCAGGAGCTCGTGCCCAACGGCACCAAGGTCGACCTCGTCACCATGCTCGAGAAGGCCATCA
     |||| ||||  |   |  ||       || | || || |  | | |||||       | | | | ||  |  |||  |||||||| | | |||||| ||||||||| ||||||||||||||||||||   ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
----gtaaagttttgttcgctgatcgaaattcaagttcttctcc--cccggaccatcgaggctgctgcagtgg-cctgaaccgttcttgctg-ctgcagAACCGGCGCGAGCGGATCAGCGAGCGGCTGCGGGCGCTGCAGGAGCTGGTGCCCAACGGCACCAAGGTCGACCTGGTCACCATGCTCGAGAAGGCCATCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactccgaccaatccatgtaccgaactgaactcgaattgttcttgccggcggcagAATCGGCGCGAGAGGATCAGCGAGCGGCTGCGGATCCTGCAGGAGCTCGTGCCCAACGGCACCAAGGTCGACCTCGTCACCATGCTCGAGAAGGCCATCA
                                       ttcttgcc  CT-rich tract
                                  aattgtt  TA-rich tract