1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gaccaaaattgttgcctgaattcagccgtagtttacccttggagtacgtacatggttcaattaatttgctctagctgataattgtgcttgatgcctgcagATGATGCGGAGAAGAAACCCAAAAGTGTAGTTGATGTTGGCTGTGGCATTGGTGGTAGCTCAAGATACTTGGCGAACAAATACGGAGCGCAATGCTACGG
species | Oryza sativa |
transcript | LOC_Os02g47310.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCCAGATCCGCATGATCGAGGAATCCCTCGCCTTCGCCGCCGTCCC-G ATGATGCGGAGAAGAAACCCAAAAGTGTAGTTGATGTTGGCTGTGGTATTGEST: gi|58589847|gb|CF988155.1|CF988155
genomic: CGCCCAGATCCGCATGATCGAGGAATCCCTCGCCTTCGCCGCCGTCCCCGgtacgtattg ... atgcctgcagATGATGCGGAGAAGAAACCCAAAAGTGTAGTTGATGTTGGCTGTGGCATTG
EST: CGCCCAGATCCGCATGATCGAGGAATCCCTCGCCTTCGCCGCCGTCCCCG ATGATGCGGAGAAGAAACCCAAAAGTATAGTTGATGTTGGCTGTGGCATTGEST: gi|29675075|gb|CB671350.1|CB671350
genomic: CGCCCAGATCCGCATGATCGAGGAATCCCTCGCCTTCGCCGCCGTCCCCGgtacgtattg ... atgcctgcagATGATGCGGAGAAGAAACCCAAAAGTGTAGTTGATGTTGGCTGTGGCATTG
EST: CGCCCAGATACGCATGATCGAGGAATCCCTCGCCTTCGCCGCCGTCCCCG ATGATGCGGAGAAGAAACCCAAAAGTGTACTTGATGTTGGCTGTGGCATTGEST: gi|88406650|gb|CI603844.1|CI603844
genomic: CGCCCAGATCCGCATGATCGAGGAATCCCTCGCCTTCGCCGCCGTCCCCGgtacgtattg ... atgcctgcagATGATGCGGAGAAGAAACCCAAAAGTGTAGTTGATGTTGGCTGTGGCATTG
EST: CGCCCAGATCCGCATGATCGAGGAATCCCTCGCCTTCGCCGCCGTCCCCG ATGATGCGGAGAAGAAACCCAACAGTGTAGTTGATGTTGGCTGTGGCATTGEST: gi|29643990|gb|CB648997.1|CB648997
genomic: CGCCCAGATCCGCATGATCGAGGAATCCCTCGCCTTCGCCGCCGTCCCCGgtacgtattg ... atgcctgcagATGATGCGGAGAAGAAACCCAAAAGTGTAGTTGATGTTGGCTGTGGCATTG
EST: CGCCCAGATCCGCATGATCGAGGAATCCCTCGCCTTCGCCGCCGTCCCCG ATGATGCGGAGAAGAAACCCAAAAGTGTAGTTGATGTTGGCTGTGGCATTGEST: gi|38470558|gb|CF954689.1|CF954689
genomic: CGCCCAGATCCGCATGATCGAGGAATCCCTCGCCTTCGCCGCCGTCCCCGgtacgtattg ... atgcctgcagATGATGCGGAGAAGAAACCCAAAAGTGTAGTTGATGTTGGCTGTGGCATTG
EST: CGCCCAGATCCGCATGATCGAGGAATCCCTCGCCTTCGCCGCCGTCCCCG ATGATGCGGAGAAGAAACCCAAAAGTATAGTTGATGTTGGCTGTGGCATTG
genomic: CGCCCAGATCCGCATGATCGAGGAATCCCTCGCCTTCGCCGCCGTCCCCGgtacgtattg ... atgcctgcagATGATGCGGAGAAGAAACCCAAAAGTGTAGTTGATGTTGGCTGTGGCATTG
acgtacatggttcaattaatttgctctagctgataattgtgcttgatgcctgcagATGATGCGGAGAAGAAACCCAAAAGTGTAGTTGATGTTGGCTGTGGCATTGGTGGTAGCTCAAGATACTTGGCGAACAAATACGGAGCGCAATGCTACGG
ttcaattaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaccaaaattgttgcctgaattcagccgtagtttacccttggagtacgtacatggttcaattaatttgctctagctgataattgtgcttgatgcctgcagATGATGCGGAGAAGAAACCCAAAAGTGTAGTTGATGTTGGCTGTGGCATTGGTGGTAGCTCAAGATACTTGGCGAACAAATACGGAGCGCAATGCTACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
gaccaaa
- - - - -tgttgcc
- - - - - - - - - - - - - - - - - - - - - - - -gtacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcttg